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3ZGV
Asym. Unit
Info
Asym.Unit (305 KB)
Biol.Unit 1 (296 KB)
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(1)
Title
:
STRUCTURE OF HUMAN SIRT2 IN COMPLEX WITH ADP-RIBOSE
Authors
:
S. Moniot, C. Steegborn
Date
:
19 Dec 12 (Deposition) - 13 Mar 13 (Release) - 08 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Moniot, M. Schutkowski, C. Steegborn
Crystal Structure Analysis Of Human Sirt2 And Its Adp-Ribose Complex
J. Struct. Biol. V. 182 136 2013
[
close entry info
]
Hetero Components
(5, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6a)
2b: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6b)
3a: GLYCEROL (GOLa)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
AR6
2
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
3
GOL
1
Ligand/Ion
GLYCEROL
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:195 , CYS A:200 , CYS A:221 , CYS A:224
BINDING SITE FOR RESIDUE ZN A 400
02
AC2
SOFTWARE
PHE A:96 , HIS A:187 , VAL A:233 , AR6 A:500 , HOH A:2068
BINDING SITE FOR RESIDUE ACT A 470
03
AC3
SOFTWARE
GLY A:84 , ALA A:85 , GLY A:86 , THR A:89 , ASP A:95 , PHE A:96 , ARG A:97 , TYR A:104 , GLN A:167 , HIS A:187 , PHE A:235 , GLY A:261 , THR A:262 , SER A:263 , VAL A:266 , ASN A:286 , LYS A:287 , GLU A:288 , GLY A:322 , GLU A:323 , CYS A:324 , ACT A:470 , HOH A:2023 , HOH A:2034 , HOH A:2105 , HOH A:2141
BINDING SITE FOR RESIDUE AR6 A 500
04
AC4
SOFTWARE
LEU A:321 , HOH A:2138
BINDING SITE FOR RESIDUE ACT A1000
05
AC5
SOFTWARE
ARG A:97 , GLU A:116 , GLN A:265 , HOH A:2107
BINDING SITE FOR RESIDUE ACT A1001
06
AC6
SOFTWARE
SER A:293 , MET A:299 , GLY A:304 , GLY A:306
BINDING SITE FOR RESIDUE ACT A1002
07
AC7
SOFTWARE
CYS B:195 , CYS B:200 , CYS B:221 , CYS B:224
BINDING SITE FOR RESIDUE ZN B 400
08
AC8
SOFTWARE
ILE B:169 , HIS B:187 , VAL B:233 , AR6 B:500
BINDING SITE FOR RESIDUE ACT B 470
09
AC9
SOFTWARE
GLY B:84 , ALA B:85 , GLY B:86 , THR B:89 , ASP B:95 , PHE B:96 , ARG B:97 , TYR B:104 , GLN B:167 , HIS B:187 , PHE B:235 , GLY B:261 , THR B:262 , SER B:263 , VAL B:266 , ASN B:286 , LYS B:287 , GLU B:288 , GLY B:322 , GLU B:323 , CYS B:324 , ACT B:470 , HOH B:2017 , HOH B:2049 , HOH B:2083
BINDING SITE FOR RESIDUE AR6 B 500
10
BC1
SOFTWARE
GOL B:1357
BINDING SITE FOR RESIDUE ACT B1000
11
BC2
SOFTWARE
HOH A:2046 , GLU B:116 , ACT B:1000
BINDING SITE FOR RESIDUE GOL B1357
12
BC3
SOFTWARE
GLY B:291 , SER B:293 , PRO B:295 , MET B:299 , MET B:301 , LEU B:303 , GLY B:304 , HOH B:2103
BINDING SITE FOR RESIDUE PGE B1358
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:65-340,B:65-340)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR2_HUMAN
65-340
2
A:65-340
B:65-340
[
close PROSITE info
]
Exons
(13, 26)
Info
All Exons
Exon 1.4g (A:57-76 | B:55-76)
Exon 1.7a (A:76-90 | B:76-90)
Exon 1.7f (A:90-125 | B:90-125)
Exon 1.7i (A:126-144C (gaps) | B:126-144 (gap...)
Exon 1.7m (A:145-167 | B:145-167)
Exon 1.8b (A:168-211 | B:168-211)
Exon 1.9a (A:211-231 | B:211-231)
Exon 1.9c (A:231-249 | B:231-249)
Exon 1.9e (A:250-275 | B:250-275)
Exon 1.10a (A:275-292 | B:275-292)
Exon 1.10d (A:293-316 | B:293-316)
Exon 1.10e (A:316-338 | B:316-338)
Exon 1.10i (A:339-355 | B:339-355)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4f/1.4g
02: Boundary 1.4g/1.7a
03: Boundary 1.7a/1.7f
04: Boundary 1.7f/1.7i
05: Boundary 1.7i/1.7m
06: Boundary 1.7m/1.8b
07: Boundary 1.8b/1.9a
08: Boundary 1.9a/1.9c
09: Boundary 1.9c/1.9e
10: Boundary 1.9e/1.10a
11: Boundary 1.10a/1.10d
12: Boundary 1.10d/1.10e
13: Boundary 1.10e/1.10i
14: Boundary 1.10i/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000249396
1b
ENSE00002166335
chr19:
39390463-39390146
318
SIR2_HUMAN
1-6
6
0
-
-
1.2c
ENST00000249396
2c
ENSE00001791433
chr19:
39389065-39389019
47
SIR2_HUMAN
6-21
16
0
-
-
1.4f
ENST00000249396
4f
ENSE00001617031
chr19:
39384507-39384459
49
SIR2_HUMAN
22-38
17
0
-
-
1.4g
ENST00000249396
4g
ENSE00001749853
chr19:
39384167-39384054
114
SIR2_HUMAN
38-76
39
2
A:57-76
B:55-76
20
22
1.7a
ENST00000249396
7a
ENSE00001775340
chr19:
39380784-39380743
42
SIR2_HUMAN
76-90
15
2
A:76-90
B:76-90
15
15
1.7f
ENST00000249396
7f
ENSE00001732119
chr19:
39380601-39380495
107
SIR2_HUMAN
90-125
36
2
A:90-125
B:90-125
36
36
1.7i
ENST00000249396
7i
ENSE00001708720
chr19:
39380385-39380329
57
SIR2_HUMAN
126-144
19
2
A:126-144C (gaps)
B:126-144 (gaps)
19
19
1.7m
ENST00000249396
7m
ENSE00002185410
chr19:
39379795-39379727
69
SIR2_HUMAN
145-167
23
2
A:145-167
B:145-167
23
23
1.8b
ENST00000249396
8b
ENSE00001800539
chr19:
39374396-39374267
130
SIR2_HUMAN
168-211
44
2
A:168-211
B:168-211
44
44
1.9a
ENST00000249396
9a
ENSE00001659952
chr19:
39372131-39372072
60
SIR2_HUMAN
211-231
21
2
A:211-231
B:211-231
21
21
1.9c
ENST00000249396
9c
ENSE00001662677
chr19:
39371795-39371740
56
SIR2_HUMAN
231-249
19
2
A:231-249
B:231-249
19
19
1.9e
ENST00000249396
9e
ENSE00002200155
chr19:
39371537-39371461
77
SIR2_HUMAN
250-275
26
2
A:250-275
B:250-275
26
26
1.10a
ENST00000249396
10a
ENSE00000882535
chr19:
39371376-39371325
52
SIR2_HUMAN
275-292
18
2
A:275-292
B:275-292
18
18
1.10d
ENST00000249396
10d
ENSE00000704563
chr19:
39370342-39370272
71
SIR2_HUMAN
293-316
24
2
A:293-316
B:293-316
24
24
1.10e
ENST00000249396
10e
ENSE00001609776
chr19:
39370140-39370074
67
SIR2_HUMAN
316-338
23
2
A:316-338
B:316-338
23
23
1.10i
ENST00000249396
10i
ENSE00001935156
chr19:
39369950-39369197
754
SIR2_HUMAN
339-389
51
2
A:339-355
B:339-355
17
17
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3zgva_ (A:)
1b: SCOP_d3zgvb_ (B:)
View:
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Sir2 family of transcriptional regulators
(31)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3zgva_
A:
1b
d3zgvb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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