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3W2Y
Asym. Unit
Info
Asym.Unit (199 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DNA URIDINE ENDONUCLEASE MTH212 MUTANT W205S
Authors
:
N. Tabata, T. Shida, R. Arai
Date
:
06 Dec 12 (Deposition) - 11 Dec 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A (1x)
Biol. Unit 2: D (1x)
Keywords
:
Alpha/Beta-Sandwich, Hydrolase, Dna Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tabata, T. Shida, R. Arai
Crystal Structure Of Dna Uridine Endonuclease Mth212
To Be Published
[
close entry info
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
1f: FORMIC ACID (FMTf)
1g: FORMIC ACID (FMTg)
1h: FORMIC ACID (FMTh)
1i: FORMIC ACID (FMTi)
1j: FORMIC ACID (FMTj)
1k: FORMIC ACID (FMTk)
1l: FORMIC ACID (FMTl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
12
Ligand/Ion
FORMIC ACID
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:12 , GLU A:38 , HOH A:411 , HOH A:468 , HOH A:509 , HOH A:590
BINDING SITE FOR RESIDUE MG A 301
02
AC2
SOFTWARE
PHE A:86 , HOH A:594
BINDING SITE FOR RESIDUE FMT A 302
03
AC3
SOFTWARE
LYS A:183 , ASN A:187 , HOH A:495 , GLN D:45
BINDING SITE FOR RESIDUE FMT A 303
04
AC4
SOFTWARE
PRO A:43 , PHE A:59 , PHE A:60 , GLU A:214 , HOH A:431 , HOH A:558
BINDING SITE FOR RESIDUE FMT A 304
05
AC5
SOFTWARE
GLU A:158 , ARG A:178 , HOH A:613 , ASN D:114 , LYS D:116
BINDING SITE FOR RESIDUE FMT A 305
06
AC6
SOFTWARE
ARG A:236 , HOH A:447 , HOH A:614
BINDING SITE FOR RESIDUE FMT A 306
07
AC7
SOFTWARE
LYS A:116 , ASN A:153 , SER A:171 , TRP A:219 , HOH A:413 , HOH A:579
BINDING SITE FOR RESIDUE PEG A 308
08
AC8
SOFTWARE
TYR A:208 , MET A:244 , GLY A:245 , SER A:246
BINDING SITE FOR RESIDUE FMT A 309
09
AC9
SOFTWARE
ARG A:194 , MET A:195 , PHE A:196 , SER A:198
BINDING SITE FOR RESIDUE PEG A 310
10
BC1
SOFTWARE
LYS A:40 , TYR A:68 , SER A:69 , TYR A:111
BINDING SITE FOR RESIDUE FMT A 311
11
BC2
SOFTWARE
ARG A:163 , ASN A:167 , TRP A:219 , HOH A:435 , HOH A:479
BINDING SITE FOR RESIDUE FMT A 312
12
BC3
SOFTWARE
HIS A:156 , ARG A:157 , ILE A:185 , HOH A:430 , HOH A:456 , HOH A:581
BINDING SITE FOR RESIDUE FMT A 313
13
BC4
SOFTWARE
ASN D:12 , GLU D:38 , HOH D:407 , HOH D:425 , HOH D:430 , HOH D:449
BINDING SITE FOR RESIDUE MG D 301
14
BC5
SOFTWARE
ARG D:157 , GLU D:158 , ILE D:159 , ARG D:178 , HOH D:525 , HOH D:535
BINDING SITE FOR RESIDUE FMT D 302
15
BC6
SOFTWARE
MET D:195 , SER D:198
BINDING SITE FOR RESIDUE FMT D 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3w2ya_ (A:)
1b: SCOP_d3w2yd_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Methanothermobacter thermautotrophicus [TaxId: 187420]
(15)
1a
d3w2ya_
A:
1b
d3w2yd_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (199 KB)
Header - Asym.Unit
Biol.Unit 1 (96 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
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