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Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A0-DOMAIN OF P5 FROM H. SAPIENS
Authors
:
K. Inaba, M. Suzuki
Date
:
03 Sep 12 (Deposition) - 04 Sep 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Pdi Family Member, Thioredoxin Fold, Protein Disulfide Isomerase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sato, R. Kojima, M. Okumura, M. Hagiwara, S. Masui, K. Maegawa, M. Saiki, T. Horibe, M. Suzuki, K. Inaba
Synergistic Cooperation Of Pdi Family Members In Peroxiredoxin 4-Driven Oxidative Protein Folding
Sci Rep V. 3 2456 2013
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1b: N-DIMETHYL-LYSINE (MLYb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
2
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:59 , PRO A:101 , ARG A:120 , HOH A:368 , HOH A:380 , SER B:35
BINDING SITE FOR RESIDUE PO4 A 201
2
AC2
SOFTWARE
HIS A:59 , ARG A:62 , ASN B:38 , GLN B:43
BINDING SITE FOR RESIDUE PO4 B 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_1 (A:49-67,B:49-67|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
PDIA6_HUMAN
47-65
182-200
2
A:49-67
B:49-67
-
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Exons
(4, 8)
Info
All Exons
Exon 1.10 (A:27-56 | B:27-56)
Exon 1.11 (A:56-75 | B:56-75)
Exon 1.12b (A:76-118 | B:76-118)
Exon 1.13 (A:118-142 | B:118-142)
View:
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All Exon Boundaries
1: Boundary 1.8a/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12b
4: Boundary 1.12b/1.13
5: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.8a
ENST00000272227
8a
ENSE00001401250
chr2:
10952970-10952804
167
PDIA6_HUMAN
1-7
7
0
-
-
1.10
ENST00000272227
10
ENSE00000996575
chr2:
10942766-10942625
142
PDIA6_HUMAN
7-54
48
2
A:27-56
B:27-56
30
30
1.11
ENST00000272227
11
ENSE00000962411
chr2:
10937883-10937826
58
PDIA6_HUMAN
54-73
20
2
A:56-75
B:56-75
20
20
1.12b
ENST00000272227
12b
ENSE00000962412
chr2:
10937333-10937207
127
PDIA6_HUMAN
74-116
43
2
A:76-118
B:76-118
43
43
1.13
ENST00000272227
13
ENSE00000962413
chr2:
10933328-10933222
107
PDIA6_HUMAN
116-151
36
2
A:118-142
B:118-142
25
25
1.14
ENST00000272227
14
ENSE00000962414
chr2:
10932051-10931921
131
PDIA6_HUMAN
152-195
44
0
-
-
1.15
ENST00000272227
15
ENSE00000962415
chr2:
10930959-10930845
115
PDIA6_HUMAN
195-233
39
0
-
-
1.16
ENST00000272227
16
ENSE00000962416
chr2:
10930015-10929875
141
PDIA6_HUMAN
234-280
47
0
-
-
1.17
ENST00000272227
17
ENSE00000962418
chr2:
10929107-10929023
85
PDIA6_HUMAN
281-309
29
0
-
-
1.18
ENST00000272227
18
ENSE00000962419
chr2:
10928895-10928823
73
PDIA6_HUMAN
309-333
25
0
-
-
1.19
ENST00000272227
19
ENSE00000962420
chr2:
10927565-10927407
159
PDIA6_HUMAN
333-386
54
0
-
-
1.20
ENST00000272227
20
ENSE00000962421
chr2:
10925156-10925060
97
PDIA6_HUMAN
386-418
33
0
-
-
1.21c
ENST00000272227
21c
ENSE00001893291
chr2:
10924452-10923517
936
PDIA6_HUMAN
419-440
22
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3vwwa_ (A:)
1b: SCOP_d3vwwb_ (B:)
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Classes
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)
(
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(
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d3vwwa_
A:
1b
d3vwwb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (86 KB)
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