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3VW7
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROTEASE-ACTIVATED RECEPTOR 1 (PAR1) BOUND WITH ANTAGONIST VORAPAXAR AT 2.2 ANGSTROM
Authors
:
C. Zhang, Y. Srinivasan, D. H. Arlow, J. J. Fung, D. Palmer, Y. Zheng, H. F A. Pandey, R. O. Dror, D. E. Shaw, W. I. Weis, S. R. Coughlin, B. K. Kobilk
Date
:
07 Aug 12 (Deposition) - 12 Dec 12 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
High Resolution Structure, Protease-Activated Receptor 1, Inactive Conformation, Antagonist Vorapaxar, G Protein-Coupled Receptor, Signaling Protein, Membrane Protein, Thrombin Receptor-Antagonist Complex, Signaling Protein-Antagonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Zhang, Y. Srinivasan, D. H. Arlow, J. J. Fung, D. Palmer, Y. Zheng, H. F. Green, A. Pandey, R. O. Dror, D. E. Shaw, W. I. Weis, S. R. Coughlin, B. K. Kobilka
High-Resolution Crystal Structure Of Human Protease-Activated Receptor 1
Nature V. 492 387 2012
[
close entry info
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SODIUM ION (NAa)
3a: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCa)
3b: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCb)
3c: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCc)
3d: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCd)
3e: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCe)
3f: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCf)
3g: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCg)
3h: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCh)
3i: (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTA... (OLCi)
4a: ETHYL [(1R,3AR,4AR,6R,8AR,9S,9AS)-... (VPXa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
3
OLC
9
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4
VPX
1
Ligand/Ion
ETHYL [(1R,3AR,4AR,6R,8AR,9S,9AS)-9-{(E)-2-[5-(3-FLUOROPHENYL)PYRIDIN-2-YL]ETHENYL}-1-METHYL-3-OXODODECAHYDRONAPHTHO[2,3-C]FURAN-6-YL]CARBAMATE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:183 , TYR A:187 , PRO A:236 , HIS A:255 , ASP A:256 , VAL A:257 , LEU A:258 , PHE A:271 , ARG A:1080 , LEU A:332 , LEU A:333 , TYR A:337 , ALA A:349 , TYR A:350 , TYR A:353 , HOH A:3004
BINDING SITE FOR RESIDUE VPX A 2001
02
AC2
SOFTWARE
PHE A:157 , TYR A:206 , ILE A:284 , ARG A:295 , OLC A:2003
BINDING SITE FOR RESIDUE OLC A 2002
03
AC3
SOFTWARE
SER A:160 , SER A:164 , OLC A:2002 , OLC A:2004
BINDING SITE FOR RESIDUE OLC A 2003
04
AC4
SOFTWARE
PHE A:113 , PRO A:156 , SER A:160 , PHE A:163 , SER A:164 , LEU A:202 , LEU A:229 , PHE A:278 , OLC A:2003 , OLC A:2010
BINDING SITE FOR RESIDUE OLC A 2004
05
AC5
SOFTWARE
MET A:122 , VAL A:126 , PHE A:127 , CYS A:365 , PRO A:368 , TYR A:371 , TYR A:372 , SER A:375
BINDING SITE FOR RESIDUE OLC A 2005
06
AC6
SOFTWARE
TRP A:100 , PRO A:328 , ALA A:348 , PHE A:351 , CYS A:356 , HOH A:3067
BINDING SITE FOR RESIDUE OLC A 2006
07
AC7
SOFTWARE
GLY A:327 , PRO A:328 , THR A:343 , THR A:346 , ALA A:348 , CYS A:356
BINDING SITE FOR RESIDUE OLC A 2007
08
AC8
SOFTWARE
VAL A:139 , HIS A:143 , SER A:220 , LEU A:224 , ALA A:228
BINDING SITE FOR RESIDUE OLC A 2008
09
AC9
SOFTWARE
PRO A:236 , LYS A:240 , TYR A:270 , PHE A:271
BINDING SITE FOR RESIDUE OLC A 2009
10
BC1
SOFTWARE
PHE A:163 , PHE A:221 , THR A:222 , OLC A:2004
BINDING SITE FOR RESIDUE OLC A 2010
11
BC2
SOFTWARE
LYS A:135 , LYS A:307
BINDING SITE FOR RESIDUE CL A 2011
12
BC3
SOFTWARE
LEU A:144 , ASP A:148 , SER A:189 , ASP A:367 , HOH A:3065 , HOH A:3066
BINDING SITE FOR RESIDUE NA A 2012
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014167 (S166G, chain A, )
2: VAR_049432 (Y187N, chain A, )
3: VAR_049433 (V257L, chain A, )
4: VAR_060680 (A268P, chain A, )
5: VAR_060681 (A335V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014167
S
166
G
PAR1_HUMAN
Polymorphism
5893
A
S
166
G
2
UniProt
VAR_049432
Y
187
N
PAR1_HUMAN
Polymorphism
2230849
A
Y
187
N
3
UniProt
VAR_049433
V
257
L
PAR1_HUMAN
Polymorphism
2227832
A
V
257
L
4
UniProt
VAR_060680
A
268
P
PAR1_HUMAN
Polymorphism
1055103
A
A
268
P
5
UniProt
VAR_060681
A
335
V
PAR1_HUMAN
Polymorphism
17849599
A
A
335
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F1_1 (A:188-204)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F1_1
PS00237
G-protein coupled receptors family 1 signature.
PAR1_HUMAN
188-204
1
A:188-204
[
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Exons
(1, 1)
Info
All Exons
Exon 1.4b (A:91-378 (gaps))
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000319211
1a
ENSE00001259499
chr5:
76011868-76012220
353
PAR1_HUMAN
1-30
30
0
-
-
1.4b
ENST00000319211
4b
ENSE00001259490
chr5:
76028139-76031606
3468
PAR1_HUMAN
30-425
396
1
A:91-378 (gaps)
449
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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