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3VU3
Biol. Unit 1
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Asym.Unit (185 KB)
Biol.Unit 1 (705 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HFQ AND CATALASE HPII COMPLEX
Authors
:
M. Watanabe, K. Yonekura
Date
:
15 Jun 12 (Deposition) - 20 Nov 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,C,D,E,F,G,H
Biol. Unit 1: A,C,D,E,F,G,H (4x)
Keywords
:
Hydroperoxidase Hpii, Rna Binding Protein, Oxidoreductase-Rna Binding Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Yonekura, M. Watanabe, Y. Kageyama, K. Hirata, M. Yamamoto, S. Maki-Yonekura
Post-Transcriptional Regulator Hfq Binds Catalase Hpii: Crystal Structure Of The Complex
Plos One V. 8 78216 2013
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Hetero Components
(1, 4)
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All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
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No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:125 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , PHE A:214 , HIS A:275 , PHE A:391 , LEU A:407 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419
BINDING SITE FOR RESIDUE HEM A 801
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 12)
Info
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1: CATALASE_3 (A:77-568)
2: CATALASE_2 (A:117-133)
3: CATALASE_1 (A:411-419)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATE_ECOLI
77-568
4
A:77-568
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATE_ECOLI
117-133
4
A:117-133
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATE_ECOLI
411-419
4
A:411-419
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d3vu3c_ (C:)
1b: SCOP_d3vu3d_ (D:)
1c: SCOP_d3vu3e_ (E:)
1d: SCOP_d3vu3f_ (F:)
1e: SCOP_d3vu3g_ (G:)
1f: SCOP_d3vu3h_ (H:)
2a: SCOP_d3vu3a2 (A:598-753)
3a: SCOP_d3vu3a1 (A:27-597)
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Class
:
All beta proteins
(24004)
Fold
:
Sm-like fold
(103)
Superfamily
:
Sm-like ribonucleoproteins
(95)
Family
:
Pleiotropic translational regulator Hfq
(28)
Protein domain
:
automated matches
(15)
Escherichia coli K-12 [TaxId: 83333]
(6)
1a
d3vu3c_
C:
1b
d3vu3d_
D:
1c
d3vu3e_
E:
1d
d3vu3f_
F:
1e
d3vu3g_
G:
1f
d3vu3h_
H:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Catalase, C-terminal domain
(17)
Protein domain
:
Catalase, C-terminal domain
(17)
Escherichia coli, HPII [TaxId: 562]
(16)
2a
d3vu3a2
A:598-753
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
Catalase II
(16)
Escherichia coli, HPII [TaxId: 562]
(16)
3a
d3vu3a1
A:27-597
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (185 KB)
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