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3UXL
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (447 KB)
Biol.Unit 2 (451 KB)
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(1)
Title
:
P. PUTIDA MANDELATE RACEMASE CO-CRYSTALLIZED WITH THE INTERMEDIATE ANALOGUE CUPFERRON
Authors
:
A. D. Lietzan, E. Pellmann, M. St Maurice
Date
:
05 Dec 11 (Deposition) - 08 Feb 12 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (4x)
Biol. Unit 2: B,D (4x)
Keywords
:
Enolase Superfamily Enzyme, Isomerase
(Keyword Search:
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Reference
:
A. D. Lietzan, M. Nagar, E. A. Pellmann, J. R. Bourque, S. L. Bearne, M. St Maurice
Structure Of Mandelate Racemase With Bound Intermediate Analogues Benzohydroxamate And Cupferron.
Biochemistry V. 51 1160 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1-HYDROXY-2-OXO-1-PHENYLHYDRAZINE (CFIa)
1b: 1-HYDROXY-2-OXO-1-PHENYLHYDRAZINE (CFIb)
1c: 1-HYDROXY-2-OXO-1-PHENYLHYDRAZINE (CFIc)
1d: 1-HYDROXY-2-OXO-1-PHENYLHYDRAZINE (CFId)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CFI
4
Ligand/Ion
1-HYDROXY-2-OXO-1-PHENYLHYDRAZINE
2
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:195 , GLU A:221 , GLU A:247 , CFI A:361 , HOH A:518
BINDING SITE FOR RESIDUE MG A 360
2
AC2
SOFTWARE
LYS A:164 , LYS A:166 , ASP A:195 , ASN A:197 , GLU A:221 , GLU A:247 , HIS A:297 , GLU A:317 , MG A:360 , HOH A:518 , HOH A:591
BINDING SITE FOR RESIDUE CFI A 361
3
AC3
SOFTWARE
ASP B:195 , GLU B:221 , GLU B:247 , CFI B:361 , HOH B:520
BINDING SITE FOR RESIDUE MG B 360
4
AC4
SOFTWARE
LYS B:164 , LYS B:166 , ASP B:195 , ASN B:197 , GLU B:221 , GLU B:247 , HIS B:297 , GLU B:317 , MG B:360 , HOH B:520 , HOH B:546
BINDING SITE FOR RESIDUE CFI B 361
5
AC5
SOFTWARE
ASP C:195 , GLU C:221 , GLU C:247 , CFI C:361 , HOH C:524
BINDING SITE FOR RESIDUE MG C 360
6
AC6
SOFTWARE
LYS C:164 , LYS C:166 , ASP C:195 , ASN C:197 , GLU C:221 , GLU C:247 , HIS C:297 , MG C:360 , HOH C:524 , HOH C:603
BINDING SITE FOR RESIDUE CFI C 361
7
AC7
SOFTWARE
ASP D:195 , GLU D:221 , GLU D:247 , CFI D:361 , HOH D:525
BINDING SITE FOR RESIDUE MG D 360
8
AC8
SOFTWARE
LYS D:164 , LYS D:166 , ASP D:195 , ASN D:197 , GLU D:221 , GLU D:247 , HIS D:297 , MG D:360 , HOH D:525 , HOH D:604
BINDING SITE FOR RESIDUE CFI D 361
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: MR_MLE_1 (A:103-128,B:103-128,C:103-128,D:10...)
2: MR_MLE_2 (A:192-223,B:192-223,C:192-223,D:19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MR_MLE_1
PS00908
Mandelate racemase / muconate lactonizing enzyme family signature 1.
MANR_PSEPU
103-128
4
A:103-128
B:103-128
C:103-128
D:103-128
2
MR_MLE_2
PS00909
Mandelate racemase / muconate lactonizing enzyme family signature 2.
MANR_PSEPU
192-223
4
A:192-223
B:192-223
C:192-223
D:192-223
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3uxla1 (A:3-132)
1b: SCOP_d3uxlb1 (B:3-132)
1c: SCOP_d3uxlc1 (C:3-132)
1d: SCOP_d3uxld1 (D:3-132)
2a: SCOP_d3uxlc2 (C:133-359)
2b: SCOP_d3uxld2 (D:133-359)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Pseudomonas putida [TaxId: 303]
(5)
1a
d3uxla1
A:3-132
1b
d3uxlb1
B:3-132
1c
d3uxlc1
C:3-132
1d
d3uxld1
D:3-132
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
automated matches
(16)
Pseudomonas putida [TaxId: 303]
(5)
2a
d3uxlc2
C:133-359
2b
d3uxld2
D:133-359
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (447 KB)
Header - Biol.Unit 1
Biol.Unit 2 (451 KB)
Header - Biol.Unit 2
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