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3UVE
Asym. Unit
Info
Asym.Unit (368 KB)
Biol.Unit 1 (361 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CARVEOL DEHYDROGENASE ((+)-TRANS-CARVEOL DEHYDROGENASE) FROM MYCOBACTERIUM AVIUM
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
29 Nov 11 (Deposition) - 14 Dec 11 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
3c: TETRAETHYLENE GLYCOL (PG4c)
3d: TETRAETHYLENE GLYCOL (PG4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , ARG A:17 , GLY A:18 , GLN A:19 , ASP A:38 , ILE A:39 , ILE A:43 , SER A:55 , VAL A:79 , ASP A:80 , VAL A:81 , ASN A:107 , ALA A:108 , GLY A:109 , ILE A:110 , ILE A:131 , THR A:159 , SER A:160 , SER A:161 , TYR A:174 , LYS A:178 , PRO A:204 , THR A:205 , HIS A:206 , VAL A:207 , THR A:209 , PRO A:210 , MET A:211 , HOH A:289 , HOH A:294 , HOH A:297 , HOH A:562 , HOH A:579
BINDING SITE FOR RESIDUE NAD A 300
02
AC2
SOFTWARE
GLY A:151 , ARG A:152 , GLN A:194 , HIS A:195 , HOH A:773 , HOH A:904 , PRO D:244
BINDING SITE FOR RESIDUE PG4 A 305
03
AC3
SOFTWARE
ASP A:263 , ARG A:266 , HOH A:355
BINDING SITE FOR RESIDUE EDO A 310
04
AC4
SOFTWARE
GLY B:14 , ARG B:17 , GLN B:19 , ASP B:38 , ILE B:39 , ILE B:43 , SER B:55 , VAL B:79 , ASP B:80 , VAL B:81 , ASN B:107 , ALA B:108 , GLY B:109 , ILE B:110 , ILE B:131 , THR B:159 , SER B:160 , SER B:161 , TYR B:174 , LYS B:178 , PRO B:204 , THR B:205 , HIS B:206 , VAL B:207 , THR B:209 , PRO B:210 , MET B:211 , HOH B:298 , HOH B:318 , HOH B:409 , HOH B:703
BINDING SITE FOR RESIDUE NAD B 300
05
AC5
SOFTWARE
GLY B:151 , MET B:196 , HOH B:507 , HOH B:849
BINDING SITE FOR RESIDUE PG4 B 305
06
AC6
SOFTWARE
ASP B:263 , HOH C:354
BINDING SITE FOR RESIDUE EDO B 310
07
AC7
SOFTWARE
GLY B:111 , TYR B:174 , HOH B:606 , HOH B:718
BINDING SITE FOR RESIDUE EDO B 286
08
AC8
SOFTWARE
GLY C:14 , ARG C:17 , GLN C:19 , ASP C:38 , ILE C:39 , ILE C:43 , SER C:55 , VAL C:79 , ASP C:80 , VAL C:81 , ASN C:107 , ALA C:108 , GLY C:109 , ILE C:110 , ILE C:131 , THR C:159 , SER C:160 , SER C:161 , TYR C:174 , LYS C:178 , PRO C:204 , THR C:205 , HIS C:206 , VAL C:207 , THR C:209 , PRO C:210 , MET C:211 , HOH C:288 , HOH C:295 , HOH C:411 , HOH C:580
BINDING SITE FOR RESIDUE NAD C 300
09
AC9
SOFTWARE
GLY C:151 , ARG C:152 , GLN C:194 , HIS C:195
BINDING SITE FOR RESIDUE PG4 C 305
10
BC1
SOFTWARE
ASP C:263 , ARG C:266
BINDING SITE FOR RESIDUE EDO C 310
11
BC2
SOFTWARE
GLY D:14 , ARG D:17 , GLY D:18 , GLN D:19 , ASP D:38 , ILE D:39 , ILE D:43 , SER D:55 , VAL D:79 , ASP D:80 , VAL D:81 , ASN D:107 , ALA D:108 , GLY D:109 , ILE D:110 , ILE D:131 , THR D:159 , SER D:160 , SER D:161 , TYR D:174 , LYS D:178 , PRO D:204 , THR D:205 , HIS D:206 , VAL D:207 , THR D:209 , PRO D:210 , MET D:211 , HOH D:301 , HOH D:306 , HOH D:504 , HOH D:565
BINDING SITE FOR RESIDUE NAD D 300
12
BC3
SOFTWARE
PRO A:244 , GLY D:151 , ARG D:152 , GLY D:153 , GLN D:194 , MET D:196 , HOH D:772
BINDING SITE FOR RESIDUE PG4 D 305
13
BC4
SOFTWARE
ASP D:263 , ARG D:266 , HOH D:323
BINDING SITE FOR RESIDUE EDO D 310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3uvea_ (A:)
1b: SCOP_d3uveb_ (B:)
1c: SCOP_d3uvec_ (C:)
1d: SCOP_d3uved_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Mycobacterium avium [TaxId: 243243]
(4)
1a
d3uvea_
A:
1b
d3uveb_
B:
1c
d3uvec_
C:
1d
d3uved_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (368 KB)
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Header - Biol.Unit 1
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