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3UVD
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN TRANSCRIPTION ACTIVATOR BRG1 (SMARCA4) IN COMPLEX WITH N-METHYL-2-PYRROLIDONE
Authors
:
P. Filippakopoulos, I. Felletar, S. Picaud, T. Keates, J. Muniz, O. Gil F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, Structural Genomics Consortium (Sgc)
Date
:
29 Nov 11 (Deposition) - 18 Jan 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bromodomain, Atp-Dependent Helicase Smarca4, Brg1-Associated Factor 190A, Baf190A, Mitotic Growth And Transcription Activator, Protein Brg-1, Protein Brahma Homolog 1, Snf2-Beta, Swi/Snf-Related Matrix- Associated Actin-Dependent Regulator Of Chromatin Subfamily A Member 4, Structural Genomics Consortium, Sgc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-METHYLPYRROLIDIN-2-ONE (MB3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MB3
1
Ligand/Ion
1-METHYLPYRROLIDIN-2-ONE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:58 , VAL A:1484 , PHE A:1485 , PHE A:1539 , ASN A:1540
BINDING SITE FOR RESIDUE MB3 A 1
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:1477-1547)
2: BROMODOMAIN_1 (A:1482-1539)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
SMCA4_HUMAN
1477-1547
1
A:1477-1547
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
SMCA4_HUMAN
1482-1539
1
A:1482-1539
[
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Exons
(4, 4)
Info
All Exons
Exon 1.33b (A:1447-1475)
Exon 1.34a (A:1475-1511)
Exon 1.35 (A:1512-1545)
Exon 1.36 (A:1546-1568)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.30/1.33b
2: Boundary 1.33b/1.34a
3: Boundary 1.34a/1.35
4: Boundary 1.35/1.36
5: Boundary 1.36/1.37
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000344626
1
ENSE00001132251
chr19:
11071598-11071850
253
SMCA4_HUMAN
-
0
0
-
-
1.3a
ENST00000344626
3a
ENSE00000874191
chr19:
11094797-11095049
253
SMCA4_HUMAN
1-74
74
0
-
-
1.4
ENST00000344626
4
ENSE00000874194
chr19:
11095949-11096081
133
SMCA4_HUMAN
75-119
45
0
-
-
1.5
ENST00000344626
5
ENSE00000874195
chr19:
11096865-11097269
405
SMCA4_HUMAN
119-254
136
0
-
-
1.6
ENST00000344626
6
ENSE00000874198
chr19:
11097581-11097679
99
SMCA4_HUMAN
254-287
34
0
-
-
1.7
ENST00000344626
7
ENSE00000874199
chr19:
11098342-11098600
259
SMCA4_HUMAN
287-373
87
0
-
-
1.8
ENST00000344626
8
ENSE00000874200
chr19:
11099993-11100119
127
SMCA4_HUMAN
373-415
43
0
-
-
1.9
ENST00000344626
9
ENSE00001729313
chr19:
11101826-11101999
174
SMCA4_HUMAN
416-473
58
0
-
-
1.10
ENST00000344626
10
ENSE00000874205
chr19:
11105504-11105677
174
SMCA4_HUMAN
474-531
58
0
-
-
1.11
ENST00000344626
11
ENSE00001328899
chr19:
11106889-11107056
168
SMCA4_HUMAN
532-587
56
0
-
-
1.12
ENST00000344626
12
ENSE00000874208
chr19:
11107170-11107220
51
SMCA4_HUMAN
588-604
17
0
-
-
1.13
ENST00000344626
13
ENSE00000874209
chr19:
11113705-11113835
131
SMCA4_HUMAN
605-648
44
0
-
-
1.14
ENST00000344626
14
ENSE00000874210
chr19:
11114016-11114073
58
SMCA4_HUMAN
648-667
20
0
-
-
1.15
ENST00000344626
15
ENSE00000874211
chr19:
11118578-11118699
122
SMCA4_HUMAN
668-708
41
0
-
-
1.16
ENST00000344626
16
ENSE00000874212
chr19:
11121057-11121207
151
SMCA4_HUMAN
708-758
51
0
-
-
1.17
ENST00000344626
17
ENSE00000874213
chr19:
11123625-11123788
164
SMCA4_HUMAN
759-813
55
0
-
-
1.18
ENST00000344626
18
ENSE00000874214
chr19:
11129633-11129699
67
SMCA4_HUMAN
813-835
23
0
-
-
1.19
ENST00000344626
19
ENSE00001266976
chr19:
11130267-11130377
111
SMCA4_HUMAN
836-872
37
0
-
-
1.20
ENST00000344626
20
ENSE00001669212
chr19:
11132401-11132643
243
SMCA4_HUMAN
873-953
81
0
-
-
1.21
ENST00000344626
21
ENSE00000954162
chr19:
11134194-11134307
114
SMCA4_HUMAN
954-991
38
0
-
-
1.22
ENST00000344626
22
ENSE00000954163
chr19:
11135007-11135114
108
SMCA4_HUMAN
992-1027
36
0
-
-
1.23
ENST00000344626
23
ENSE00001621775
chr19:
11136098-11136184
87
SMCA4_HUMAN
1028-1056
29
0
-
-
1.24
ENST00000344626
24
ENSE00000954165
chr19:
11136976-11137022
47
SMCA4_HUMAN
1057-1072
16
0
-
-
1.25
ENST00000344626
25
ENSE00000954166
chr19:
11138460-11138626
167
SMCA4_HUMAN
1072-1128
57
0
-
-
1.26
ENST00000344626
26
ENSE00000954167
chr19:
11141406-11141569
164
SMCA4_HUMAN
1128-1182
55
0
-
-
1.27
ENST00000344626
27
ENSE00001671853
chr19:
11143966-11144193
228
SMCA4_HUMAN
1183-1258
76
0
-
-
1.28
ENST00000344626
28
ENSE00000954169
chr19:
11144443-11144541
99
SMCA4_HUMAN
1259-1291
33
0
-
-
1.29
ENST00000344626
29
ENSE00000954170
chr19:
11144799-11144876
78
SMCA4_HUMAN
1292-1317
26
0
-
-
1.30
ENST00000344626
30
ENSE00000954171
chr19:
11145590-11145808
219
SMCA4_HUMAN
1318-1390
73
0
-
-
1.33b
ENST00000344626
33b
ENSE00001413377
chr19:
11151983-11152236
254
SMCA4_HUMAN
1391-1475
85
1
A:1447-1475
29
1.34a
ENST00000344626
34a
ENSE00001360053
chr19:
11168931-11169039
109
SMCA4_HUMAN
1475-1511
37
1
A:1475-1511
37
1.35
ENST00000344626
35
ENSE00000954175
chr19:
11169464-11169565
102
SMCA4_HUMAN
1512-1545
34
1
A:1512-1545
34
1.36
ENST00000344626
36
ENSE00001360043
chr19:
11170429-11170561
133
SMCA4_HUMAN
1546-1590
45
1
A:1546-1568
23
1.37
ENST00000344626
37
ENSE00000954177
chr19:
11170721-11170863
143
SMCA4_HUMAN
1590-1637
48
0
-
-
1.38
ENST00000344626
38
ENSE00001360023
chr19:
11172460-11172958
499
SMCA4_HUMAN
1638-1647
10
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3uvda_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d3uvda_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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