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3UF2
Asym. Unit
Info
Asym.Unit (243 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (51 KB)
Biol.Unit 5 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN COLONY-STIMULATING FACTOR 1 (HCSF-1) CYTOKINE
Authors
:
J. Elegheert, S. N. Savvides
Date
:
31 Oct 11 (Deposition) - 22 Aug 12 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Keywords
:
Hematopoietic Cytokine, Rtkiii, Four-Helix Bundle, Cytokine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Elegheert, N. Bracke, P. Pouliot, I. Gutsche, A. V. Shkumatov, N. Tarbouriech, K. Verstraete, A. Bekaert, W. P. Burmeister, D. I. Svergun, B. N. Lambrecht, B. Vergauwen, S. N. Savvides
Allosteric Competitive Inactivation Of Hematopoietic Csf-1 Signaling By The Viral Decoy Receptor Barf1
Nat. Struct. Mol. Biol. V. 19 938 2012
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 40)
Info
All Exons
Exon 1.3 (A:3-22 | B:6-22 | C:5-22 | D:6-22 ...)
Exon 1.4a (A:23-43 | B:23-43 | C:23-43 | D:23...)
Exon 1.5b (A:44-100 (gaps) | B:44-100 (gaps) ...)
Exon 1.6c (A:101-147 | B:101-146 | C:101-147 ...)
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All Exon Boundaries
1: Boundary 1.2g/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5b
4: Boundary 1.5b/1.6c
5: Boundary 1.6c/1.8c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2g
ENST00000369802
2g
ENSE00001307375
chr1:
110453521-110453684
164
CSF1_HUMAN
1-13
13
0
-
-
1.3
ENST00000369802
3
ENSE00001295761
chr1:
110456881-110457003
123
CSF1_HUMAN
14-54
41
10
A:3-22
B:6-22
C:5-22
D:6-22
E:3-22
F:4-22
G:4-22
H:5-22
I:3-22
J:3-22
20
17
18
17
20
19
19
18
20
20
1.4a
ENST00000369802
4a
ENSE00001304095
chr1:
110458256-110458318
63
CSF1_HUMAN
55-75
21
10
A:23-43
B:23-43
C:23-43
D:23-43
E:23-43
F:23-43
G:23-43
H:23-43
I:23-43
J:23-43
21
21
21
21
21
21
21
21
21
21
1.5b
ENST00000369802
5b
ENSE00001324032
chr1:
110459915-110460085
171
CSF1_HUMAN
76-132
57
10
A:44-100 (gaps)
B:44-100 (gaps)
C:44-100
D:44-100 (gaps)
E:44-100 (gaps)
F:44-100 (gaps)
G:44-100
H:44-96
I:44-100 (gaps)
J:44-94
57
57
57
57
57
57
57
53
57
51
1.6c
ENST00000369802
6c
ENSE00001291491
chr1:
110464469-110464616
148
CSF1_HUMAN
133-182
50
10
A:101-147
B:101-146
C:101-147
D:101-146
E:101-148
F:101-146
G:101-147
H:101-146
I:101-147
J:101-147
47
46
47
46
48
46
47
46
47
47
1.8c
ENST00000369802
8c
ENSE00001321883
chr1:
110465788-110466812
1025
CSF1_HUMAN
182-523
342
0
-
-
1.9
ENST00000369802
9
ENSE00001291595
chr1:
110467398-110467450
53
CSF1_HUMAN
524-541
18
0
-
-
1.10b
ENST00000369802
10b
ENSE00001310214
chr1:
110467769-110467824
56
CSF1_HUMAN
541-554
14
0
-
-
1.11
ENST00000369802
11
ENSE00001450942
chr1:
110468685-110469365
681
CSF1_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d3uf2a_ (A:)
1b: SCOP_d3uf2f_ (F:)
1c: SCOP_d3uf2g_ (G:)
1d: SCOP_d3uf2h_ (H:)
1e: SCOP_d3uf2i_ (I:)
1f: SCOP_d3uf2j_ (J:)
1g: SCOP_d3uf2b_ (B:)
1h: SCOP_d3uf2c_ (C:)
1i: SCOP_d3uf2d_ (D:)
1j: SCOP_d3uf2e_ (E:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3uf2a_
A:
1b
d3uf2f_
F:
1c
d3uf2g_
G:
1d
d3uf2h_
H:
1e
d3uf2i_
I:
1f
d3uf2j_
J:
1g
d3uf2b_
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1h
d3uf2c_
C:
1i
d3uf2d_
D:
1j
d3uf2e_
E:
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CATH Domains
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Asym.Unit (243 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
Biol.Unit 4 (51 KB)
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Biol.Unit 5 (50 KB)
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