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3UB5
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
PROFILIN:ACTIN WITH A WIDE OPEN NUCLEOTIDE CLEFT
Authors
:
J. C. Porta, G. E. Borgstahl
Date
:
23 Oct 11 (Deposition) - 25 Apr 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (1x)
Keywords
:
Atpase, Nucleotide Exchange, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. C. Porta, G. E. Borgstahl
Structural Basis For Profilin-Mediated Actin Nucleotide Exchange.
J. Mol. Biol. V. 418 103 2012
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: CHLORIDE ION (CLa)
5a: GLYCEROL (GOLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
CA
2
Ligand/Ion
CALCIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:14 , GLY A:15 , GLY A:156 , ASP A:157 , GLY A:158 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:302 , MET A:305 , TYR A:306 , LYS A:336 , CA A:377 , HOH A:381
BINDING SITE FOR RESIDUE ATP A 376
2
AC2
SOFTWARE
GLY A:15 , MET A:16 , ATP A:376
BINDING SITE FOR RESIDUE CA A 377
3
AC3
SOFTWARE
SER A:199 , THR A:201 , GLU A:205
BINDING SITE FOR RESIDUE CA A 378
4
AC4
SOFTWARE
HIS P:133 , ARG P:136
BINDING SITE FOR RESIDUE GOL P 140
5
AC5
SOFTWARE
TYR P:128 , ALA P:131 , SER P:132 , ARG P:135
BINDING SITE FOR RESIDUE CL P 141
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PROFILIN (P:1-8)
2: ACTINS_1 (A:53-63)
3: ACTINS_ACT_LIKE (A:104-116)
4: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROFILIN
PS00414
Profilin signature.
PROF1_BOVIN
1-9
1
P:1-8
2
ACTINS_1
PS00406
Actins signature 1.
ACTB_BOVIN
53-63
1
A:53-63
3
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTB_BOVIN
104-116
1
A:104-116
4
ACTINS_2
PS00432
Actins signature 2.
ACTB_BOVIN
356-364
1
A:356-364
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (P:0-43)
Exon 1.2 (P:44-108)
Exon 1.3 (P:108-139)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000006465
1
ENSBTAE00000051693
chr19:
26821468-26821753
286
PROF1_BOVIN
1-44
44
1
P:0-43
44
1.2
ENSBTAT00000006465
2
ENSBTAE00000051699
chr19:
26823296-26823488
193
PROF1_BOVIN
45-109
65
1
P:44-108
65
1.3
ENSBTAT00000006465
3
ENSBTAE00000051703
chr19:
26824096-26824443
348
PROF1_BOVIN
109-140
32
1
P:108-139
32
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3ub5p_ (P:)
2a: SCOP_d3ub5a1 (A:6-146)
2b: SCOP_d3ub5a2 (A:147-375)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
Profilin (actin-binding protein)
(31)
Family
:
Profilin (actin-binding protein)
(29)
Protein domain
:
Profilin (actin-binding protein)
(23)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d3ub5p_
P:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Cow (Bos taurus) [TaxId: 9913]
(3)
2a
d3ub5a1
A:6-146
2b
d3ub5a2
A:147-375
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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