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3UA5
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P450 2B6 (Y226H/K262R) IN COMPLEX WITH TWO MOLECULES OF AMLODIPINE
Authors
:
M. B. Shah, C. D. Stout, J. R. Halpert
Date
:
21 Oct 11 (Deposition) - 12 Sep 12 (Release) - 03 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
P450, Human Cytochrome P450 2B6, Monooxygenase, Oxidoreductase, Membrane Protein, Cyp 2B6
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Shah, P. R. Wilderman, J. Pascual, Q. Zhang, C. D. Stout, J. R. Halpert
Conformational Adaptation Of Human Cytochrome P450 2B6 And Rabbit Cytochrome P450 2B4 Revealed Upon Binding Multiple Amlodipine Molecules.
Biochemistry V. 51 7225 2012
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: AMLODIPINE (06Xa)
1b: AMLODIPINE (06Xb)
1c: AMLODIPINE (06Xc)
1d: AMLODIPINE (06Xd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
06X
4
Ligand/Ion
AMLODIPINE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:98 , VAL A:113 , TRP A:121 , ARG A:125 , ALA A:298 , GLY A:299 , THR A:302 , HIS A:369 , PRO A:428 , PHE A:429 , SER A:430 , ARG A:434 , CYS A:436 , LEU A:437 , GLY A:438 , 06X A:501
BINDING SITE FOR RESIDUE HEM A 500
2
AC2
SOFTWARE
ILE A:101 , PHE A:115 , ALA A:298 , THR A:300 , THR A:302 , VAL A:477 , HEM A:500
BINDING SITE FOR RESIDUE 06X A 501
3
AC3
SOFTWARE
ARG A:49 , LEU A:51 , ARG A:73 , GLN A:215 , GLU A:218 , LEU A:219 , MET A:365 , PHE A:389 , GLY A:476 , VAL A:477
BINDING SITE FOR RESIDUE 06X A 502
4
AC4
SOFTWARE
ARG B:98 , VAL B:113 , TRP B:121 , ARG B:125 , THR B:302 , THR B:306 , LEU B:362 , HIS B:369 , PRO B:428 , PHE B:429 , SER B:430 , ARG B:434 , CYS B:436 , LEU B:437 , GLY B:438 , 06X B:501
BINDING SITE FOR RESIDUE HEM B 500
5
AC5
SOFTWARE
ILE B:101 , PHE B:115 , PHE B:206 , SER B:210 , PHE B:297 , ALA B:298 , THR B:300 , GLU B:301 , THR B:302 , VAL B:477 , HEM B:500
BINDING SITE FOR RESIDUE 06X B 501
6
AC6
SOFTWARE
LEU B:51 , ARG B:73 , GLN B:215 , GLU B:218 , LEU B:219 , PRO B:368 , PHE B:389 , GLY B:476 , VAL B:477
BINDING SITE FOR RESIDUE 06X B 502
[
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]
SAPs(SNPs)/Variants
(16, 31)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_025207 (G28G, chain A, )
02: VAR_033819 (K29P, chain A/B, )
03: VAR_025208 (K29S, chain A/B, )
04: VAR_023564 (M46V, chain A/B, )
05: VAR_023565 (G99E, chain A/B, )
06: VAR_016948 (K139E, chain A/B, )
07: VAR_023566 (R140Q, chain A/B, )
08: VAR_016924 (P167A, chain A/B, )
09: VAR_016925 (Q172H, chain A/B, )
10: VAR_016928 (S259R, chain A/B, )
11: VAR_016926 (R262R, chain A/B, )
12: VAR_025209 (N289K, chain A/B, )
13: VAR_025210 (T306S, chain A/B, )
14: VAR_024716 (I328T, chain A/B, )
15: VAR_023567 (I391N, chain A/B, )
16: VAR_016929 (R487C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_025207
D
28
G
CP2B6_HUMAN
Polymorphism
33980385
A
G
28
G
02
UniProt
VAR_033819
R
29
P
CP2B6_HUMAN
Polymorphism
34284776
A/B
K
29
P
03
UniProt
VAR_025208
R
29
S
CP2B6_HUMAN
Polymorphism
33926104
A/B
K
29
S
04
UniProt
VAR_023564
M
46
V
CP2B6_HUMAN
Polymorphism
35303484
A/B
M
46
V
05
UniProt
VAR_023565
G
99
E
CP2B6_HUMAN
Polymorphism
36060847
A/B
G
99
E
06
UniProt
VAR_016948
K
139
E
CP2B6_HUMAN
Polymorphism
12721655
A/B
K
139
E
07
UniProt
VAR_023566
R
140
Q
CP2B6_HUMAN
Polymorphism
35773040
A/B
R
140
Q
08
UniProt
VAR_016924
P
167
A
CP2B6_HUMAN
Polymorphism
3826711
A/B
P
167
A
09
UniProt
VAR_016925
Q
172
H
CP2B6_HUMAN
Polymorphism
3745274
A/B
Q
172
H
10
UniProt
VAR_016928
S
259
R
CP2B6_HUMAN
Polymorphism
45482602
A/B
S
259
R
11
UniProt
VAR_016926
K
262
R
CP2B6_HUMAN
Polymorphism
2279343
A/B
R
262
R
12
UniProt
VAR_025209
N
289
K
CP2B6_HUMAN
Polymorphism
34277950
A/B
N
289
K
13
UniProt
VAR_025210
T
306
S
CP2B6_HUMAN
Polymorphism
34698757
A/B
T
306
S
14
UniProt
VAR_024716
I
328
T
CP2B6_HUMAN
Polymorphism
28399499
A/B
I
328
T
15
UniProt
VAR_023567
I
391
N
CP2B6_HUMAN
Polymorphism
35979566
A/B
I
391
N
16
UniProt
VAR_016929
R
487
C
CP2B6_HUMAN
Polymorphism
3211371
A/B
R
487
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:429-438,B:429-438)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2B6_HUMAN
429-438
2
A:429-438
B:429-438
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ua5a_ (A:)
1b: SCOP_d3ua5b_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
automated matches
(44)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d3ua5a_
A:
1b
d3ua5b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
Biol.Unit 3 (155 KB)
Header - Biol.Unit 3
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