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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3U7U
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (214 KB)
Biol.Unit 2 (230 KB)
Biol.Unit 3 (227 KB)
Biol.Unit 4 (230 KB)
Biol.Unit 5 (227 KB)
Biol.Unit 6 (226 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXTRACELLULAR REGION OF HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR 4 IN COMPLEX WITH NEUREGULIN-1 BETA
Authors
:
P. Liu, T. E. Cleveland Iv, S. Bouyain, P. A. Longo, D. J. Leahy
Date
:
14 Oct 11 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.03
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,G (1x)
Biol. Unit 2: B,H (1x)
Biol. Unit 3: C,I (1x)
Biol. Unit 4: D,J (1x)
Biol. Unit 5: E,K (1x)
Biol. Unit 6: F,L (1x)
Keywords
:
Signaling Protein, Transferase-Transferase Regulator Complex, Glycosylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Liu, T. E. Cleveland, S. Bouyain, P. O. Byrne, P. A. Longo, D. J. Leahy
A Single Ligand Is Sufficient To Activate Egfr Dimers.
Proc. Natl. Acad. Sci. Usa V. 109 10861 2012
[
close entry info
]
Hetero Components
(1, 26)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
1y: N-ACETYL-D-GLUCOSAMINE (NAGy)
1z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
26
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:75 , ASN A:76 , ARG A:78 , ASN A:113 , PHE A:222 , HOH A:626 , NAG E:1001
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
CYS A:221 , ASN A:228 , GLY A:231
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
ASN A:333
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
ASN A:448 , THR A:450 , ARG D:25 , GLU D:29
BINDING SITE FOR RESIDUE NAG A 1004
05
AC5
SOFTWARE
ASN B:76 , ARG B:78 , ASN B:113 , PHE B:222 , HOH B:658 , NAG C:1001
BINDING SITE FOR RESIDUE NAG B 1001
06
AC6
SOFTWARE
CYS B:221 , ASN B:228 , GLY B:231
BINDING SITE FOR RESIDUE NAG B 1002
07
AC7
SOFTWARE
ASN B:385
BINDING SITE FOR RESIDUE NAG B 1003
08
AC8
SOFTWARE
ASN B:448 , THR B:450 , THR B:451 , ASP B:485 , ARG F:25 , GLU F:29
BINDING SITE FOR RESIDUE NAG B 1004
09
AC9
SOFTWARE
ARG B:466 , ASN B:470 , GLU B:474
BINDING SITE FOR RESIDUE NAG B 1005
10
BC1
SOFTWARE
ASN B:523 , ILE B:526 , VAL B:528
BINDING SITE FOR RESIDUE NAG B 1006
11
BC2
SOFTWARE
NAG B:1001 , GLU C:75 , ASN C:76 , ARG C:78 , ASN C:113 , PHE C:222
BINDING SITE FOR RESIDUE NAG C 1001
12
BC3
SOFTWARE
CYS C:221 , ASN C:228 , GLY C:231 , HOH C:624
BINDING SITE FOR RESIDUE NAG C 1002
13
BC4
SOFTWARE
ASN D:76 , ARG D:78 , ASN D:113 , PHE D:222 , NAG F:1001
BINDING SITE FOR RESIDUE NAG D 1001
14
BC5
SOFTWARE
CYS D:221 , ASN D:228 , GLN E:191
BINDING SITE FOR RESIDUE NAG D 1002
15
BC6
SOFTWARE
ASN D:333
BINDING SITE FOR RESIDUE NAG D 1003
16
BC7
SOFTWARE
PRO D:361 , GLU D:362 , ASN D:385
BINDING SITE FOR RESIDUE NAG D 1004
17
BC8
SOFTWARE
ARG A:25 , GLU A:29 , ASN D:448 , THR D:450 , THR D:451 , ASP D:485 , HOH D:619
BINDING SITE FOR RESIDUE NAG D 1005
18
BC9
SOFTWARE
NAG A:1001 , ASN E:76 , ARG E:78 , ASN E:113 , PHE E:222
BINDING SITE FOR RESIDUE NAG E 1001
19
CC1
SOFTWARE
CYS E:221 , ASN E:228 , GLY E:231 , HOH E:644
BINDING SITE FOR RESIDUE NAG E 1002
20
CC2
SOFTWARE
ARG C:25 , GLU C:29 , ASN E:448 , THR E:450 , THR E:451
BINDING SITE FOR RESIDUE NAG E 1003
21
CC3
SOFTWARE
NAG D:1001 , ASN F:76 , ARG F:78 , ASN F:113 , PHE F:222
BINDING SITE FOR RESIDUE NAG F 1001
22
CC4
SOFTWARE
CYS F:221 , ASN F:228 , GLY F:231
BINDING SITE FOR RESIDUE NAG F 1002
23
CC5
SOFTWARE
ASN F:333
BINDING SITE FOR RESIDUE NAG F 1003
24
CC6
SOFTWARE
ARG B:25 , GLU B:29 , ASN F:448 , THR F:450 , THR F:451
BINDING SITE FOR RESIDUE NAG F 1004
25
CC7
SOFTWARE
ARG F:466 , ASN F:470 , GLU F:474
BINDING SITE FOR RESIDUE NAG F 1005
26
CC8
SOFTWARE
ASN F:523
BINDING SITE FOR RESIDUE NAG F 1006
[
close Site info
]
SAPs(SNPs)/Variants
(2, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042113 (T115I, chain A/B/C/D/E/F, )
2: VAR_042114 (S278Y, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042113
T
140
I
ERBB4_HUMAN
Unclassified
---
A/B/C/D/E/F
T
115
I
2
UniProt
VAR_042114
S
303
Y
ERBB4_HUMAN
Unclassified
---
A/B/C/D/E/F
S
278
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (G:4-47,H:4-47,I:4-47,J:4-47,K:4-47...)
2: EGF_1 (G:36-47,H:36-47,I:36-47,J:36-47,K:...)
3: EGF_2 (G:36-47,H:36-47,I:36-47,J:36-47,K:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
NRG1_HUMAN
178-222
6
G:4-47
H:4-47
I:4-47
J:4-47
K:4-47
L:4-47
2
EGF_1
PS00022
EGF-like domain signature 1.
NRG1_HUMAN
210-221
6
G:36-47
H:36-47
I:36-47
J:36-47
K:36-47
L:36-47
3
EGF_2
PS01186
EGF-like domain signature 2.
NRG1_HUMAN
210-221
6
G:36-47
H:36-47
I:36-47
J:36-47
K:36-47
L:36-47
[
close PROSITE info
]
Exons
(16, 95)
Info
All Exons
Exon 1.1a (A:1-3 | B:1-3 | C:1-3 | D:1-3 | E:...)
Exon 1.4a (A:3-53 | B:3-53 | C:3-53 | D:3-53 ...)
Exon 1.6 (A:54-116 | B:54-116 | C:54-116 | D...)
Exon 1.7 (A:116-161 (gaps) | B:116-161 (gaps...)
Exon 1.8b (A:161-183 | B:161-183 | C:161-183 ...)
Exon 1.9b (A:183-222 | B:183-222 | C:183-222 ...)
Exon 1.10 (A:223-270 | B:223-270 | C:223-270 ...)
Exon 1.11 (A:270-308 | B:270-308 | C:270-308 ...)
Exon 1.12 (A:308-350 | B:308-350 | C:308-350 ...)
Exon 1.13 (A:350-375 | B:350-375 | C:350-375 ...)
Exon 1.14 (A:375-405 | B:375-405 | C:375-405 ...)
Exon 1.15 (A:405-472 | B:405-472 | C:405-472 ...)
Exon 1.16 (A:472-516 | B:472-516 | C:472-516 ...)
Exon 1.17 (A:516-547 | B:516-547 | C:516-547 ...)
Exon 1.18a (A:548-556 | B:548-599 (gaps) | C:5...)
Exon 1.20a (- | B:599-612 | C:599-609 | D:599-...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4a
03: Boundary 1.4a/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8b
06: Boundary 1.8b/1.9b
07: Boundary 1.9b/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
14: Boundary 1.16/1.17
15: Boundary 1.17/1.18a
16: Boundary 1.18a/1.20a
17: Boundary 1.20a/1.21
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000342788
1a
ENSE00001557570
chr2:
213403565-213403173
393
ERBB4_HUMAN
1-28
28
6
A:1-3
B:1-3
C:1-3
D:1-3
E:1-3
F:1-3
3
3
3
3
3
3
1.4a
ENST00000342788
4a
ENSE00001771678
chr2:
212989628-212989477
152
ERBB4_HUMAN
28-78
51
6
A:3-53
B:3-53
C:3-53
D:3-53
E:3-53
F:3-53
51
51
51
51
51
51
1.6
ENST00000342788
6
ENSE00001307932
chr2:
212812341-212812155
187
ERBB4_HUMAN
79-141
63
6
A:54-116
B:54-116
C:54-116
D:54-116
E:54-116
F:54-116
63
63
63
63
63
63
1.7
ENST00000342788
7
ENSE00001330200
chr2:
212652884-212652750
135
ERBB4_HUMAN
141-186
46
6
A:116-161 (gaps)
B:116-161 (gaps)
C:116-161 (gaps)
D:116-161 (gaps)
E:116-161 (gaps)
F:116-161 (gaps)
46
46
46
46
46
46
1.8b
ENST00000342788
8b
ENSE00001309248
chr2:
212615429-212615364
66
ERBB4_HUMAN
186-208
23
6
A:161-183
B:161-183
C:161-183
D:161-183
E:161-183
F:161-183
23
23
23
23
23
23
1.9b
ENST00000342788
9b
ENSE00001231844
chr2:
212589919-212589801
119
ERBB4_HUMAN
208-247
40
6
A:183-222
B:183-222
C:183-222
D:183-222
E:183-222
F:183-222
40
40
40
40
40
40
1.10
ENST00000342788
10
ENSE00001231830
chr2:
212587259-212587118
142
ERBB4_HUMAN
248-295
48
6
A:223-270
B:223-270
C:223-270
D:223-270
E:223-270
F:223-270
48
48
48
48
48
48
1.11
ENST00000342788
11
ENSE00001231825
chr2:
212578373-212578260
114
ERBB4_HUMAN
295-333
39
6
A:270-308
B:270-308
C:270-308
D:270-308
E:270-308
F:270-308
39
39
39
39
39
39
1.12
ENST00000342788
12
ENSE00001231820
chr2:
212576901-212576775
127
ERBB4_HUMAN
333-375
43
6
A:308-350
B:308-350
C:308-350
D:308-350
E:308-350
F:308-350
43
43
43
43
43
43
1.13
ENST00000342788
13
ENSE00001231810
chr2:
212570116-212570043
74
ERBB4_HUMAN
375-400
26
6
A:350-375
B:350-375
C:350-375
D:350-375
E:350-375
F:350-375
26
26
26
26
26
26
1.14
ENST00000342788
14
ENSE00001231802
chr2:
212568919-212568829
91
ERBB4_HUMAN
400-430
31
6
A:375-405
B:375-405
C:375-405
D:375-405
E:375-405
F:375-405
31
31
31
31
31
31
1.15
ENST00000342788
15
ENSE00001231837
chr2:
212566891-212566692
200
ERBB4_HUMAN
430-497
68
6
A:405-472
B:405-472
C:405-472
D:405-472
E:405-472
F:405-472
68
68
68
68
68
68
1.16
ENST00000342788
16
ENSE00001289675
chr2:
212543909-212543777
133
ERBB4_HUMAN
497-541
45
6
A:472-516
B:472-516
C:472-516
D:472-516
E:472-516
F:472-516
45
45
45
45
45
45
1.17
ENST00000342788
17
ENSE00001314199
chr2:
212537982-212537889
94
ERBB4_HUMAN
541-572
32
6
A:516-547
B:516-547
C:516-547
D:516-547
E:516-547
F:516-547
32
32
32
32
32
32
1.18a
ENST00000342788
18a
ENSE00001309289
chr2:
212530202-212530048
155
ERBB4_HUMAN
573-624
52
6
A:548-556
B:548-599 (gaps)
C:548-599 (gaps)
D:548-599 (gaps)
E:548-599 (gaps)
F:548-599 (gaps)
9
52
52
52
52
52
1.20a
ENST00000342788
20a
ENSE00001312803
chr2:
212522553-212522479
75
ERBB4_HUMAN
624-649
26
5
-
B:599-612
C:599-609
D:599-614
E:599-608
F:599-610
-
14
11
16
10
12
1.21
ENST00000342788
21
ENSE00001310742
chr2:
212495319-212495187
133
ERBB4_HUMAN
649-693
45
0
-
-
1.22
ENST00000342788
22
ENSE00001318394
chr2:
212488769-212488647
123
ERBB4_HUMAN
694-734
41
0
-
-
1.23b
ENST00000342788
23b
ENSE00001318884
chr2:
212484000-212483902
99
ERBB4_HUMAN
735-767
33
0
-
-
1.24a
ENST00000342788
24a
ENSE00001295501
chr2:
212426813-212426628
186
ERBB4_HUMAN
768-829
62
0
-
-
1.25
ENST00000342788
25
ENSE00001002880
chr2:
212295825-212295670
156
ERBB4_HUMAN
830-881
52
0
-
-
1.26
ENST00000342788
26
ENSE00000965161
chr2:
212293208-212293133
76
ERBB4_HUMAN
882-907
26
0
-
-
1.27
ENST00000342788
27
ENSE00000965162
chr2:
212289026-212288880
147
ERBB4_HUMAN
907-956
50
0
-
-
1.28
ENST00000342788
28
ENSE00001002882
chr2:
212286829-212286732
98
ERBB4_HUMAN
956-988
33
0
-
-
1.29
ENST00000342788
29
ENSE00001002878
chr2:
212285336-212285166
171
ERBB4_HUMAN
989-1045
57
0
-
-
1.30
ENST00000342788
30
ENSE00001329579
chr2:
212252717-212252670
48
ERBB4_HUMAN
1046-1061
16
0
-
-
1.31
ENST00000342788
31
ENSE00001302849
chr2:
212251875-212251578
298
ERBB4_HUMAN
1062-1161
100
0
-
-
1.32b
ENST00000342788
32b
ENSE00001330493
chr2:
212248785-212240446
8340
ERBB4_HUMAN
1161-1308
148
0
-
-
[
close EXON info
]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3u7ua1 (A:1-154)
1b: SCOP_d3u7ua3 (A:312-477)
2a: SCOP_d3u7ua2 (A:159-311)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3u7ua1
A:1-154
1b
d3u7ua3
A:312-477
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Growth factor receptor domain
(25)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d3u7ua2
A:159-311
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1.3 MB)
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