PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3TWR
Asym. Unit
Info
Asym.Unit (251 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (62 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ARC4 FROM HUMAN TANKYRASE 2 IN COMPLEX WITH PEPTIDE FROM HUMAN 3BP2
Authors
:
S. Guettler, F. Sicheri
Date
:
22 Sep 11 (Deposition) - 07 Dec 11 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Ankyrin Repeat, Protein-Protein Interaction, Substrate Recruitment, Poly(Adp-Ribosyl)Ation, Signaling Protein-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Guettler, J. Larose, E. Petsalaki, G. Gish, A. Scotter, T. Pawson, R. Rottapel, F. Sicheri
Structural Basis And Sequence Rules For Substrate Recognition By Tankyrase Explain The Basis For Cherubism Disease.
Cell(Cambridge, Mass. ) V. 147 1340 2011
[
close entry info
]
Hetero Components
(3, 15)
Info
All Hetero Components
1a: 3,6,9,12,15,18,21-HEPTAOXATRICOSAN... (PE8a)
1b: 3,6,9,12,15,18,21-HEPTAOXATRICOSAN... (PE8b)
2a: AMINOSERINE (SETa)
2b: AMINOSERINE (SETb)
2c: AMINOSERINE (SETc)
2d: AMINOSERINE (SETd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PE8
2
Ligand/Ion
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
2
SET
4
Mod. Amino Acid
AMINOSERINE
3
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:501 , TYR A:536 , HOH A:921 , LYS B:592 , ARG B:623 , GLN E:12
BINDING SITE FOR RESIDUE SO4 A 700
02
AC2
SOFTWARE
GLY A:503 , ARG A:538 , VAL A:539 , SER A:540 , VAL A:541 , HOH A:818 , HOH A:884 , ARG H:15
BINDING SITE FOR RESIDUE SO4 A 701
03
AC3
SOFTWARE
ARG B:494 , GLN B:495
BINDING SITE FOR RESIDUE SO4 B 700
04
AC4
SOFTWARE
TYR B:572 , GLU B:606 , TYR C:569 , GLY C:570 , GLY C:603 , LYS C:604 , SER G:13 , PHE G:14
BINDING SITE FOR RESIDUE PE8 C 700
05
AC5
SOFTWARE
HOH B:804 , ASN C:537 , GLY C:570 , HIS C:571 , TYR C:572 , GLU C:573 , HOH C:804 , HOH C:809 , HOH C:826 , ARG F:15 , HOH F:215
BINDING SITE FOR RESIDUE SO4 C 701
06
AC6
SOFTWARE
HOH B:924 , LYS C:592 , ARG C:623 , HOH C:899 , HOH C:939
BINDING SITE FOR RESIDUE SO4 C 702
07
AC7
SOFTWARE
ASN D:537 , GLY D:570 , HIS D:571 , TYR D:572 , GLU D:573 , HOH D:820 , HOH D:824 , HOH D:835 , HOH D:879 , HOH D:911 , ARG E:15
BINDING SITE FOR RESIDUE SO4 D 700
08
AC8
SOFTWARE
HOH A:818 , ASN D:537 , ARG D:538 , VAL D:539 , SER D:540 , HOH D:844 , HOH D:931 , HOH D:952 , ARG E:15
BINDING SITE FOR RESIDUE SO4 D 701
09
AC9
SOFTWARE
TYR A:569 , GLY A:570 , GLY A:603 , LYS A:604 , ASP B:624 , GLY B:625 , ASN B:626 , HOH B:974 , TYR D:572 , GLU D:576 , GLU D:606 , GLN D:613 , HIS D:614 , HOH D:824 , HOH D:901 , SER E:13 , PHE E:14
BINDING SITE FOR RESIDUE PE8 E 100
10
BC1
SOFTWARE
TYR B:569 , LYS B:602 , GLN F:12 , SER F:13
BINDING SITE FOR RESIDUE SO4 F 100
11
BC2
SOFTWARE
TYR D:569 , LYS D:602 , GLN H:12 , SER H:13
BINDING SITE FOR RESIDUE SO4 H 100
[
close Site info
]
SAPs(SNPs)/Variants
(7, 28)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013257 (R6P, chain E/F/G/H, )
2: VAR_013258 (R6Q, chain E/F/G/H, )
3: VAR_013259 (P9H, chain E/F/G/H, )
4: VAR_013260 (P9L, chain E/F/G/H, )
5: VAR_013261 (P9R, chain E/F/G/H, )
6: VAR_013262 (G11E, chain E/F/G/H, )
7: VAR_013263 (G11R, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013257
R
415
P
3BP2_HUMAN
Disease (CRBM)
---
E/F/G/H
R
6
P
2
UniProt
VAR_013258
R
415
Q
3BP2_HUMAN
Disease (CRBM)
---
E/F/G/H
R
6
Q
3
UniProt
VAR_013259
P
418
H
3BP2_HUMAN
Disease (CRBM)
---
E/F/G/H
P
9
H
4
UniProt
VAR_013260
P
418
L
3BP2_HUMAN
Disease (CRBM)
---
E/F/G/H
P
9
L
5
UniProt
VAR_013261
P
418
R
3BP2_HUMAN
Disease (CRBM)
---
E/F/G/H
P
9
R
6
UniProt
VAR_013262
G
420
E
3BP2_HUMAN
Disease (CRBM)
28938171
E/F/G/H
G
11
E
7
UniProt
VAR_013263
G
420
R
3BP2_HUMAN
Disease (CRBM)
28938170
E/F/G/H
G
11
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: ANK_REPEAT (-|-|-|-|-|-|-|-|-|A:525-557,B:525-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REPEAT
PS50088
Ankyrin repeat profile.
TNKS2_HUMAN
57-89
90-122
123-155
210-242
243-275
276-308
363-398
399-431
432-464
525-557
558-590
591-623
678-710
711-743
744-776
12
-
-
-
-
-
-
-
-
-
A:525-557
B:525-557
C:525-557
D:525-557
A:558-590
B:558-590
C:558-590
D:558-590
A:591-623
B:591-623
C:591-623
D:591-623
-
-
-
[
close PROSITE info
]
Exons
(2, 7)
Info
All Exons
Exon 1.20c (E:4-5 | F:4-5 | - | H:5-5)
Exon 1.21 (E:5-16 | F:5-16 | G:6-16 | H:5-16)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.19c/1.20c
2: Boundary 1.20c/1.21
3: Boundary 1.21/1.22a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.13b
ENST00000356331
13b
ENSE00001338971
chr4:
2820541-2820797
257
3BP2_HUMAN
-
0
0
-
-
1.14a
ENST00000356331
14a
ENSE00002140445
chr4:
2822341-2822480
140
3BP2_HUMAN
1-46
46
0
-
-
1.15
ENST00000356331
15
ENSE00000854861
chr4:
2824662-2824764
103
3BP2_HUMAN
46-80
35
0
-
-
1.17b
ENST00000356331
17b
ENSE00001294178
chr4:
2826340-2826457
118
3BP2_HUMAN
80-119
40
0
-
-
1.17k
ENST00000356331
17k
ENSE00002152783
chr4:
2826853-2826923
71
3BP2_HUMAN
120-143
24
0
-
-
1.18f
ENST00000356331
18f
ENSE00002142654
chr4:
2828957-2829045
89
3BP2_HUMAN
143-173
31
0
-
-
1.19c
ENST00000356331
19c
ENSE00000699174
chr4:
2829333-2829401
69
3BP2_HUMAN
173-196
24
0
-
-
1.20c
ENST00000356331
20c
ENSE00001301413
chr4:
2831220-2831874
655
3BP2_HUMAN
196-414
219
3
E:4-5
F:4-5
-
H:5-5
2
2
-
1
1.21
ENST00000356331
21
ENSE00001507036
chr4:
2833298-2833406
109
3BP2_HUMAN
414-450
37
4
E:5-16
F:5-16
G:6-16
H:5-16
12
12
11
12
1.22a
ENST00000356331
22a
ENSE00001507035
chr4:
2833650-2833705
56
3BP2_HUMAN
451-469
19
0
-
-
1.22c
ENST00000356331
22c
ENSE00000854878
chr4:
2834058-2834139
82
3BP2_HUMAN
469-496
28
0
-
-
1.23b
ENST00000356331
23b
ENSE00000699192
chr4:
2834717-2834776
60
3BP2_HUMAN
497-516
20
0
-
-
1.23j
ENST00000356331
23j
ENSE00002020330
chr4:
2835424-2842825
7402
3BP2_HUMAN
517-561
45
0
-
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3twra_ (A:)
1b: SCOP_d3twrb_ (B:)
1c: SCOP_d3twrc_ (C:)
1d: SCOP_d3twrd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3twra_
A:
1b
d3twrb_
B:
1c
d3twrc_
C:
1d
d3twrd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (251 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Biol.Unit 4 (62 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3TWR
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help