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3SLP
Asym. Unit
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Asym.Unit (138 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LAMBDA EXONUCLEASE IN COMPLEX WITH A 12 BP SYMMETRIC DNA DUPLEX
Authors
:
C. E. Bell, J. Zhang
Date
:
24 Jun 11 (Deposition) - 20 Jul 11 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Type Ii Restriction Endonuclease Fold, 5'-3' Dsdna Exonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, K. A. Mccabe, C. E. Bell
Crystal Structures Of {Lambda} Exonuclease In Complex With Dna Suggest An Electrostatic Ratchet Mechanism For Processivity.
Proc. Natl. Acad. Sci. Usa V. 108 11872 2011
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
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No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:119 , GLU A:129 , HOH A:312 , HOH A:367 , HOH A:488
BINDING SITE FOR RESIDUE CA A 227
2
AC2
SOFTWARE
ARG A:28 , THR A:33 , ALA A:34 , SER A:35 , CYS A:116 , SER A:117 , HOH A:271
BINDING SITE FOR RESIDUE PO4 A 228
3
AC3
SOFTWARE
ASP B:119 , GLU B:129 , LEU B:130 , HOH B:231 , HOH B:232 , HOH B:307
BINDING SITE FOR RESIDUE CA B 227
4
AC4
SOFTWARE
ARG B:28 , THR B:33 , ALA B:34 , SER B:35 , ALA B:115 , CYS B:116 , SER B:117 , GLN B:157 , HOH B:266 , HOH B:267
BINDING SITE FOR RESIDUE PO4 B 229
5
AC5
SOFTWARE
SER C:117 , ASP C:119 , GLU C:129 , HOH C:336 , HOH C:460 , HOH C:481
BINDING SITE FOR RESIDUE CA C 227
6
AC6
SOFTWARE
ARG C:108 , ARG C:166
BINDING SITE FOR RESIDUE CL C 228
7
AC7
SOFTWARE
ARG C:28 , THR C:33 , ALA C:34 , SER C:35 , CYS C:116 , SER C:117 , HOH C:332 , HOH C:460
BINDING SITE FOR RESIDUE PO4 C 229
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3slpa_ (A:)
1b: SCOP_d3slpb_ (B:)
1c: SCOP_d3slpc_ (C:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
Restriction endonuclease-like
(170)
Family
:
lambda exonuclease
(3)
Protein domain
:
lambda exonuclease
(3)
Bacteriophage lambda [TaxId: 10710]
(3)
1a
d3slpa_
A:
1b
d3slpb_
B:
1c
d3slpc_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain E
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Asym.Unit (138 KB)
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Header - Biol.Unit 1
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