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3SIO
Biol. Unit 1
Info
Asym.Unit (417 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (205 KB)
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(1)
Title
:
AC-ACHBP LIGAND BINDING DOMAIN (NOT INCLUDING BETA 9-10 LINKER) MUTATED TO HUMAN ALPHA-7 NACHR
Authors
:
A. Nemecz, P. W. Taylor
Date
:
19 Jun 11 (Deposition) - 26 Oct 11 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Mutated Acetylcholine Binding Protein, Aplysia Californica, Alpha-7 Human Nicotinic Acetylcholine Receptor, Achbp, Nachr, Binding Protein, Acetylcholine, Glycosylation, Receptor, Methyllycaconitine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nemecz, P. Taylor
Creating An Alpha-7 Nicotinic Acetylcholine Recognition Domain From The Acetylcholine Binding Protein: Crystallographic And Ligand Selectivity Analyses
J. Biol. Chem. V. 286 42555 2011
[
close entry info
]
Hetero Components
(6, 30)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
3a: METHYLLYCACONITINE (MLKa)
3b: METHYLLYCACONITINE (MLKb)
3c: METHYLLYCACONITINE (MLKc)
3d: METHYLLYCACONITINE (MLKd)
3e: METHYLLYCACONITINE (MLKe)
3f: METHYLLYCACONITINE (MLKf)
3g: METHYLLYCACONITINE (MLKg)
3h: METHYLLYCACONITINE (MLKh)
3i: METHYLLYCACONITINE (MLKi)
3j: METHYLLYCACONITINE (MLKj)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
5b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
5c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
5d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
5e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
5f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
5g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
3
MLK
5
Ligand/Ion
METHYLLYCACONITINE
4
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
MRD
4
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
6
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: FC6 (SOFTWARE)
32: FC8 (SOFTWARE)
33: GC1 (SOFTWARE)
34: GC2 (SOFTWARE)
35: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:110 , SER A:112 , HIS A:114
BINDING SITE FOR RESIDUE NAG A 225
02
AC2
SOFTWARE
TYR A:93 , LYS A:143 , TRP A:147 , TYR A:149 , TYR A:188 , CYS A:190 , TYR A:195 , ASP A:197 , HOH A:351 , TRP E:55 , GLN E:116 , LEU E:118 , SER E:167
BINDING SITE FOR RESIDUE MLK A 260
03
AC3
SOFTWARE
ASN B:110 , SER B:112 , HIS B:114 , NAG B:226
BINDING SITE FOR RESIDUE NAG B 225
04
AC4
SOFTWARE
HIS B:114 , NAG B:225
BINDING SITE FOR RESIDUE NAG B 226
05
AC5
SOFTWARE
ASN B:74 , NAG B:241
BINDING SITE FOR RESIDUE NAG B 240
06
AC6
SOFTWARE
NAG B:240 , BMA B:242
BINDING SITE FOR RESIDUE NAG B 241
07
AC7
SOFTWARE
NAG B:241 , MAN B:243 , MAN B:246 , LYS C:25
BINDING SITE FOR RESIDUE BMA B 242
08
AC8
SOFTWARE
ASP B:-5 , LYS B:-1 , BMA B:242 , MAN B:244 , MAN B:245
BINDING SITE FOR RESIDUE MAN B 243
09
AC9
SOFTWARE
MAN B:243 , THR C:30 , LYS C:61 , HOH C:396 , HOH C:446
BINDING SITE FOR RESIDUE MAN B 244
10
BC1
SOFTWARE
ASP B:-8 , MAN B:243
BINDING SITE FOR RESIDUE MAN B 245
11
BC2
SOFTWARE
BMA B:242 , LYS C:25 , ASP C:26
BINDING SITE FOR RESIDUE MAN B 246
12
BC3
SOFTWARE
TYR B:20 , PRO B:21 , TRP B:86 , TYR B:149 , HOH B:395
BINDING SITE FOR RESIDUE MRD B 250
13
BC4
SOFTWARE
TRP A:55 , GLN A:116 , LEU A:118 , SER A:167 , TYR B:93 , LYS B:143 , SER B:146 , TRP B:147 , SER B:148 , TYR B:149 , GLN B:186 , TYR B:188 , CYS B:190 , TYR B:195 , ASP B:197 , HOH B:341
BINDING SITE FOR RESIDUE MLK B 260
14
BC5
SOFTWARE
ASN C:110 , SER C:111 , SER C:112 , HIS C:114 , HOH C:439
BINDING SITE FOR RESIDUE NAG C 225
15
BC6
SOFTWARE
ASN B:106 , TRP C:86 , TYR C:149 , HOH C:414
BINDING SITE FOR RESIDUE MRD C 250
16
BC7
SOFTWARE
TRP B:55 , GLN B:116 , LEU B:118 , SER B:167 , TYR C:93 , LYS C:143 , SER C:146 , TRP C:147 , TYR C:149 , GLN C:186 , TYR C:188 , TYR C:195 , ASP C:197 , HOH C:386 , HOH C:431
BINDING SITE FOR RESIDUE MLK C 260
17
BC8
SOFTWARE
SER C:81 , ASN C:106 , HOH C:307 , TRP D:86 , TYR D:149
BINDING SITE FOR RESIDUE MPD C 222
18
BC9
SOFTWARE
ASN C:216 , HOH C:450 , THR D:139 , CYS D:140 , ALA D:141 , HOH D:437
BINDING SITE FOR RESIDUE MRD D 251
19
CC1
SOFTWARE
ASN D:110 , SER D:112 , HIS D:114 , NAG D:226
BINDING SITE FOR RESIDUE NAG D 225
20
CC2
SOFTWARE
NAG D:225
BINDING SITE FOR RESIDUE NAG D 226
21
CC3
SOFTWARE
TRP C:55 , GLN C:116 , LEU C:118 , SER C:167 , TYR D:93 , LYS D:143 , SER D:146 , TRP D:147 , TYR D:149 , GLN D:186 , TYR D:188 , CYS D:190 , TYR D:195 , ASP D:197 , HOH D:330
BINDING SITE FOR RESIDUE MLK D 260
22
CC4
SOFTWARE
ASN D:106 , HOH D:382 , TRP E:86 , TYR E:149
BINDING SITE FOR RESIDUE MRD D 250
23
CC5
SOFTWARE
ASN E:110 , SER E:111 , SER E:112 , HIS E:114 , NAG E:226 , HOH E:309 , ARG H:205
BINDING SITE FOR RESIDUE NAG E 225
24
CC6
SOFTWARE
NAG E:225 , BMA E:227 , HOH E:439 , LYS H:203
BINDING SITE FOR RESIDUE NAG E 226
25
CC7
SOFTWARE
NAG E:226 , MAN E:228 , MAN E:230 , MAN E:231 , LYS H:203
BINDING SITE FOR RESIDUE BMA E 227
26
CC8
SOFTWARE
BMA E:227 , MAN E:230
BINDING SITE FOR RESIDUE MAN E 228
27
CC9
SOFTWARE
BMA E:227 , MAN E:228 , THR H:180 , HOH H:427
BINDING SITE FOR RESIDUE MAN E 230
28
DC1
SOFTWARE
BMA E:227 , GLU H:136 , THR H:139 , LYS H:203
BINDING SITE FOR RESIDUE MAN E 231
29
DC2
SOFTWARE
ASN E:74 , ALA H:209 , GLY H:210 , ASN H:211
BINDING SITE FOR RESIDUE NAG E 240
30
DC3
SOFTWARE
TRP D:55 , SER D:167 , TYR E:93 , LYS E:143 , SER E:146 , TRP E:147 , GLN E:186 , CYS E:190 , TYR E:195 , ASP E:197 , HOH E:414 , HOH E:415
BINDING SITE FOR RESIDUE MLK E 260
31
FC6
SOFTWARE
ARG C:205 , ASN J:110 , SER J:111 , SER J:112 , HIS J:114 , GLN J:116 , NAG J:226
BINDING SITE FOR RESIDUE NAG J 225
32
FC8
SOFTWARE
LYS C:203 , NAG J:226 , MAN J:228 , MAN J:230 , MAN J:231
BINDING SITE FOR RESIDUE BMA J 227
33
GC1
SOFTWARE
THR C:180 , VAL C:201 , LYS C:203 , HOH C:412 , BMA J:227 , MAN J:228
BINDING SITE FOR RESIDUE MAN J 230
34
GC2
SOFTWARE
GLU C:136 , BMA J:227
BINDING SITE FOR RESIDUE MAN J 231
35
GC3
SOFTWARE
ALA C:209 , ASN C:211 , ASN J:74 , HOH J:431
BINDING SITE FOR RESIDUE NAG J 240
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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[
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d3sioa_ (A:)
1b: SCOP_d3siob_ (B:)
1c: SCOP_d3sioc_ (C:)
1d: SCOP_d3siod_ (D:)
1e: SCOP_d3sioe_ (E:)
1f: SCOP_d3siof_ (F:)
1g: SCOP_d3siog_ (G:)
1h: SCOP_d3sioh_ (H:)
1i: SCOP_d3sioi_ (I:)
1j: SCOP_d3sioj_ (J:)
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Classes
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)
(
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Folds
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d3sioa_
A:
1b
d3siob_
B:
1c
d3sioc_
C:
1d
d3siod_
D:
1e
d3sioe_
E:
1f
d3siof_
F:
1g
d3siog_
G:
1h
d3sioh_
H:
1i
d3sioi_
I:
1j
d3sioj_
J:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (417 KB)
Header - Asym.Unit
Biol.Unit 1 (205 KB)
Header - Biol.Unit 1
Biol.Unit 2 (205 KB)
Header - Biol.Unit 2
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