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(-) Description

Title :  AC-ACHBP LIGAND BINDING DOMAIN (NOT INCLUDING BETA 9-10 LINKER) MUTATED TO HUMAN ALPHA-7 NACHR
 
Authors :  A. Nemecz, P. W. Taylor
Date :  19 Jun 11  (Deposition) - 26 Oct 11  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Mutated Acetylcholine Binding Protein, Aplysia Californica, Alpha-7 Human Nicotinic Acetylcholine Receptor, Achbp, Nachr, Binding Protein, Acetylcholine, Glycosylation, Receptor, Methyllycaconitine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nemecz, P. Taylor
Creating An Alpha-7 Nicotinic Acetylcholine Recognition Domain From The Acetylcholine Binding Protein: Crystallographic And Ligand Selectivity Analyses
J. Biol. Chem. V. 286 42555 2011
PubMed-ID: 22009746  |  Reference-DOI: 10.1074/JBC.M111.286583

(-) Compounds

Molecule 1 - SOLUBLE ACETYLCHOLINE RECEPTOR
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNT1-
    Expression System Plasmid: PFLAG-CMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP ENTRY 18-236
    Gene: ACHBP
    Organism Common: CALIFORNIA SEA HARE
    Organism Scientific: APLYSIA CALIFORNICA
    Organism Taxid: 6500

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 58)

Asymmetric Unit (6, 58)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN14Ligand/IonALPHA-D-MANNOSE
3MLK10Ligand/IonMETHYLLYCACONITINE
4MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD7Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
6NAG21Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (6, 30)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN7Ligand/IonALPHA-D-MANNOSE
3MLK5Ligand/IonMETHYLLYCACONITINE
4MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
6NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (6, 28)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN7Ligand/IonALPHA-D-MANNOSE
3MLK5Ligand/IonMETHYLLYCACONITINE
4MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD3Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
6NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (58, 58)

Asymmetric Unit (58, 58)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:110 , SER A:112 , HIS A:114BINDING SITE FOR RESIDUE NAG A 225
02AC2SOFTWARETYR A:93 , LYS A:143 , TRP A:147 , TYR A:149 , TYR A:188 , CYS A:190 , TYR A:195 , ASP A:197 , HOH A:351 , TRP E:55 , GLN E:116 , LEU E:118 , SER E:167BINDING SITE FOR RESIDUE MLK A 260
03AC3SOFTWAREASN B:110 , SER B:112 , HIS B:114 , NAG B:226BINDING SITE FOR RESIDUE NAG B 225
04AC4SOFTWAREHIS B:114 , NAG B:225BINDING SITE FOR RESIDUE NAG B 226
05AC5SOFTWAREASN B:74 , NAG B:241BINDING SITE FOR RESIDUE NAG B 240
06AC6SOFTWARENAG B:240 , BMA B:242BINDING SITE FOR RESIDUE NAG B 241
07AC7SOFTWARENAG B:241 , MAN B:243 , MAN B:246 , LYS C:25BINDING SITE FOR RESIDUE BMA B 242
08AC8SOFTWAREASP B:-5 , LYS B:-1 , BMA B:242 , MAN B:244 , MAN B:245BINDING SITE FOR RESIDUE MAN B 243
09AC9SOFTWAREMAN B:243 , THR C:30 , LYS C:61 , HOH C:396 , HOH C:446BINDING SITE FOR RESIDUE MAN B 244
10BC1SOFTWAREASP B:-8 , MAN B:243BINDING SITE FOR RESIDUE MAN B 245
11BC2SOFTWAREBMA B:242 , LYS C:25 , ASP C:26BINDING SITE FOR RESIDUE MAN B 246
12BC3SOFTWARETYR B:20 , PRO B:21 , TRP B:86 , TYR B:149 , HOH B:395BINDING SITE FOR RESIDUE MRD B 250
13BC4SOFTWARETRP A:55 , GLN A:116 , LEU A:118 , SER A:167 , TYR B:93 , LYS B:143 , SER B:146 , TRP B:147 , SER B:148 , TYR B:149 , GLN B:186 , TYR B:188 , CYS B:190 , TYR B:195 , ASP B:197 , HOH B:341BINDING SITE FOR RESIDUE MLK B 260
14BC5SOFTWAREASN C:110 , SER C:111 , SER C:112 , HIS C:114 , HOH C:439BINDING SITE FOR RESIDUE NAG C 225
15BC6SOFTWAREASN B:106 , TRP C:86 , TYR C:149 , HOH C:414BINDING SITE FOR RESIDUE MRD C 250
16BC7SOFTWARETRP B:55 , GLN B:116 , LEU B:118 , SER B:167 , TYR C:93 , LYS C:143 , SER C:146 , TRP C:147 , TYR C:149 , GLN C:186 , TYR C:188 , TYR C:195 , ASP C:197 , HOH C:386 , HOH C:431BINDING SITE FOR RESIDUE MLK C 260
17BC8SOFTWARESER C:81 , ASN C:106 , HOH C:307 , TRP D:86 , TYR D:149BINDING SITE FOR RESIDUE MPD C 222
18BC9SOFTWAREASN C:216 , HOH C:450 , THR D:139 , CYS D:140 , ALA D:141 , HOH D:437BINDING SITE FOR RESIDUE MRD D 251
19CC1SOFTWAREASN D:110 , SER D:112 , HIS D:114 , NAG D:226BINDING SITE FOR RESIDUE NAG D 225
20CC2SOFTWARENAG D:225BINDING SITE FOR RESIDUE NAG D 226
21CC3SOFTWARETRP C:55 , GLN C:116 , LEU C:118 , SER C:167 , TYR D:93 , LYS D:143 , SER D:146 , TRP D:147 , TYR D:149 , GLN D:186 , TYR D:188 , CYS D:190 , TYR D:195 , ASP D:197 , HOH D:330BINDING SITE FOR RESIDUE MLK D 260
22CC4SOFTWAREASN D:106 , HOH D:382 , TRP E:86 , TYR E:149BINDING SITE FOR RESIDUE MRD D 250
23CC5SOFTWAREASN E:110 , SER E:111 , SER E:112 , HIS E:114 , NAG E:226 , HOH E:309 , ARG H:205BINDING SITE FOR RESIDUE NAG E 225
24CC6SOFTWARENAG E:225 , BMA E:227 , HOH E:439 , LYS H:203BINDING SITE FOR RESIDUE NAG E 226
25CC7SOFTWARENAG E:226 , MAN E:228 , MAN E:230 , MAN E:231 , LYS H:203BINDING SITE FOR RESIDUE BMA E 227
26CC8SOFTWAREBMA E:227 , MAN E:230BINDING SITE FOR RESIDUE MAN E 228
27CC9SOFTWAREBMA E:227 , MAN E:228 , THR H:180 , HOH H:427BINDING SITE FOR RESIDUE MAN E 230
28DC1SOFTWAREBMA E:227 , GLU H:136 , THR H:139 , LYS H:203BINDING SITE FOR RESIDUE MAN E 231
29DC2SOFTWAREASN E:74 , ALA H:209 , GLY H:210 , ASN H:211BINDING SITE FOR RESIDUE NAG E 240
30DC3SOFTWARETRP D:55 , SER D:167 , TYR E:93 , LYS E:143 , SER E:146 , TRP E:147 , GLN E:186 , CYS E:190 , TYR E:195 , ASP E:197 , HOH E:414 , HOH E:415BINDING SITE FOR RESIDUE MLK E 260
31DC4SOFTWAREASN F:110 , SER F:112 , HIS F:114BINDING SITE FOR RESIDUE NAG F 225
32DC5SOFTWARETYR F:93 , LYS F:143 , TRP F:147 , TYR F:149 , TYR F:188 , CYS F:190 , TYR F:195 , ASP F:197 , HOH F:394 , TRP J:55 , GLN J:116 , LEU J:118 , SER J:167BINDING SITE FOR RESIDUE MLK F 260
33DC6SOFTWAREASN G:110 , SER G:111 , SER G:112 , HIS G:114 , NAG G:226BINDING SITE FOR RESIDUE NAG G 225
34DC7SOFTWAREHIS G:114 , NAG G:225BINDING SITE FOR RESIDUE NAG G 226
35DC8SOFTWAREASN G:74 , NAG G:241BINDING SITE FOR RESIDUE NAG G 240
36DC9SOFTWARENAG G:240 , BMA G:242 , MAN G:246BINDING SITE FOR RESIDUE NAG G 241
37EC1SOFTWARENAG G:241 , MAN G:243 , MAN G:246 , LYS H:25BINDING SITE FOR RESIDUE BMA G 242
38EC2SOFTWARELYS G:-1 , ASP G:-5 , BMA G:242 , MAN G:244 , MAN G:245BINDING SITE FOR RESIDUE MAN G 243
39EC3SOFTWAREMAN G:243 , THR H:30BINDING SITE FOR RESIDUE MAN G 244
40EC4SOFTWAREASP G:-5 , MAN G:243BINDING SITE FOR RESIDUE MAN G 245
41EC5SOFTWARENAG G:241 , BMA G:242 , LYS H:25 , ASP H:26BINDING SITE FOR RESIDUE MAN G 246
42EC6SOFTWARESER F:81 , PRO G:21 , TRP G:86 , TYR G:149BINDING SITE FOR RESIDUE MRD G 250
43EC7SOFTWARETRP F:55 , GLN F:116 , LEU F:118 , SER F:167 , TYR G:93 , LYS G:143 , SER G:146 , TRP G:147 , SER G:148 , TYR G:149 , GLN G:186 , TYR G:188 , CYS G:190 , TYR G:195 , ASP G:197 , HOH G:333BINDING SITE FOR RESIDUE MLK G 260
44EC8SOFTWAREASN H:110 , SER H:111 , SER H:112 , HIS H:114 , HOH H:428BINDING SITE FOR RESIDUE NAG H 225
45EC9SOFTWAREASN G:106 , TRP H:86 , TYR H:149BINDING SITE FOR RESIDUE MRD H 250
46FC1SOFTWARETRP G:55 , GLN G:116 , LEU G:118 , SER G:167 , TYR H:93 , LYS H:143 , TRP H:147 , SER H:148 , TYR H:149 , GLN H:186 , TYR H:188 , CYS H:190 , TYR H:195 , ASP H:197 , HOH H:334 , HOH H:363BINDING SITE FOR RESIDUE MLK H 260
47FC2SOFTWAREASN I:110 , SER I:111 , SER I:112 , HIS I:114BINDING SITE FOR RESIDUE NAG I 225
48FC3SOFTWAREASN H:106 , PRO I:21 , TRP I:86 , TYR I:149 , HOH I:391BINDING SITE FOR RESIDUE MPD I 250
49FC4SOFTWARETRP H:55 , GLN H:116 , SER H:167 , TYR I:93 , LYS I:143 , TRP I:147 , TYR I:149 , GLN I:186 , TYR I:188 , TYR I:195 , ASP I:197 , HOH I:312BINDING SITE FOR RESIDUE MLK I 260
50FC5SOFTWARESER I:81 , ASN I:106 , PRO J:21 , TRP J:86 , TYR J:149BINDING SITE FOR RESIDUE MRD I 222
51FC6SOFTWAREARG C:205 , ASN J:110 , SER J:111 , SER J:112 , HIS J:114 , GLN J:116 , NAG J:226BINDING SITE FOR RESIDUE NAG J 225
52FC7SOFTWARENAG J:225 , BMA J:227 , MAN J:228BINDING SITE FOR RESIDUE NAG J 226
53FC8SOFTWARELYS C:203 , NAG J:226 , MAN J:228 , MAN J:230 , MAN J:231BINDING SITE FOR RESIDUE BMA J 227
54FC9SOFTWARENAG J:226 , BMA J:227 , MAN J:230BINDING SITE FOR RESIDUE MAN J 228
55GC1SOFTWARETHR C:180 , VAL C:201 , LYS C:203 , HOH C:412 , BMA J:227 , MAN J:228BINDING SITE FOR RESIDUE MAN J 230
56GC2SOFTWAREGLU C:136 , BMA J:227BINDING SITE FOR RESIDUE MAN J 231
57GC3SOFTWAREALA C:209 , ASN C:211 , ASN J:74 , HOH J:431BINDING SITE FOR RESIDUE NAG J 240
58GC4SOFTWARETRP I:55 , LEU I:118 , SER I:167 , TYR J:93 , LYS J:143 , TRP J:147 , GLN J:186 , TYR J:188 , CYS J:190 , TYR J:195 , ASP J:197 , HOH J:437BINDING SITE FOR RESIDUE MLK J 260

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:127 -A:140
2A:190 -A:191
3B:127 -B:140
4B:190 -B:191
5C:127 -C:140
6C:190 -C:191
7D:127 -D:140
8D:190 -D:191
9E:127 -E:140
10E:190 -E:191
11F:127 -F:140
12F:190 -F:191
13G:127 -G:140
14G:190 -G:191
15H:127 -H:140
16H:190 -H:191
17I:127 -I:140
18I:190 -I:191
19J:127 -J:140
20J:190 -J:191

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SIO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SIO)

(-) Exons   (0, 0)

(no "Exon" information available for 3SIO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sioa_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhh....eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio A  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    


Chain B from PDB  Type:PROTEIN  Length:216
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
         Q8WSF8_APLCA     9 LLVACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3siob_ B: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhhh...eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sio B  -8 DYKDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      


Chain C from PDB  Type:PROTEIN  Length:221
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:221
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 
         Q8WSF8_APLCA    13 CVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRN 233
               SCOP domains d3sioc_ C: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio C  -4 DDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRN 216
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215 


Chain D from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
         Q8WSF8_APLCA    12 ACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3siod_ D: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio D  -5 DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    


Chain E from PDB  Type:PROTEIN  Length:216
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
         Q8WSF8_APLCA     9 LLVACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sioe_ E: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sio E  -8 DYKDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      


Chain F from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3siof_ F: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhh....eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio F  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    


Chain G from PDB  Type:PROTEIN  Length:216
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
         Q8WSF8_APLCA     9 LLVACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3siog_ G: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhhh...eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sio G  -8 DYKDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      


Chain H from PDB  Type:PROTEIN  Length:221
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:221
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 
         Q8WSF8_APLCA    13 CVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRN 233
               SCOP domains d3sioh_ H: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio H  -4 DDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRN 216
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215 


Chain I from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
         Q8WSF8_APLCA    12 ACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sioi_ I: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sio I  -5 DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    


Chain J from PDB  Type:PROTEIN  Length:216
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218      
         Q8WSF8_APLCA     9 LLVACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sioj_ J: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sio J  -8 DYKDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 207
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SIO)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (Q8WSF8_APLCA | Q8WSF8)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
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  3sio
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8WSF8_APLCA | Q8WSF8: 2br7 2br8 2byn 2byp 2byq 2byr 2bys 2c9t 2pgz 2ph9 2uz6 2w8f 2w8g 2wn9 2wnc 2wnj 2wnl 2wzy 2x00 2xnt 2xnu 2xnv 2xys 2xyt 2xz5 2xz6 2y54 2y56 2y57 2y58 2y7y 2ymd 2yme 3c79 3c84 3gua 3peo 3pmz 3sh1 3t4m 4aft 4bfq 4bqt 4dbm 4ez1 4frr 4wv9 4xhe 4xk9 4zjs 4zk4 5ain 5brx 5bw2 5co5 5jme 5ke4 5kzu 5lxb 5syo 5tvc

(-) Related Entries Specified in the PDB File

2byr AC-ACHBP-WT WITH METHYLLYCACONITINE
3sh1 AC-ACHBP-MUTANT III WITH METHYLLYCACONITINE
3t4m