PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3RW7
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (42 KB)
Biol.Unit 4 (28 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF N-TERMINAL DOMAIN OF NUCLEAR RNA EXPORT FACTOR TAP
Authors
:
M. Teplova, N. W. Khin, L. Wohlbold, E. Izaurralde, D. J. Patel
Date
:
07 May 11 (Deposition) - 10 Aug 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Rna Recognition Motif (Rrm), Leucine-Rich Repeat (Lrr) Motif, Rna Binding Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Teplova, L. Wohlbold, N. W. Khin, E. Izaurralde, D. J. Patel
Structure-Function Studies Of Nucleocytoplasmic Transport O Retroviral Genomic Rna By Mrna Export Factor Tap.
Nat. Struct. Mol. Biol. V. 18 990 2011
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: LRR (A:266-287,B:266-287,C:266-287,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
NXF1_HUMAN
266-287
292-313
316-337
12
A:266-287
B:266-287
C:266-287
D:266-287
A:292-313
B:292-313
C:292-313
D:292-313
A:316-337
B:316-337
C:316-337
D:316-337
[
close PROSITE info
]
Exons
(10, 34)
Info
All Exons
Exon 1.4g (A:118-123 | - | C:117-123 | -)
Exon 1.5b (A:124-151 | - | C:124-151 | -)
Exon 1.6c (A:152-186 | - | C:152-186 | -)
Exon 1.7 (A:187-213 (gaps) | B:203-213 | C:1...)
Exon 1.8 (A:214-237 | B:214-237 | C:214-237 ...)
Exon 1.9 (A:237-266 | B:237-266 | C:237-266 ...)
Exon 1.10 (A:267-302 | B:267-302 | C:267-302 ...)
Exon 1.11a (A:303-339 | B:303-339 | C:303-339 ...)
Exon 1.11g (A:339-351 | B:339-351 | C:339-351 ...)
Exon 1.12 (A:352-362 | B:352-362 | C:352-362 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4e/1.4g
02: Boundary 1.4g/1.5b
03: Boundary 1.5b/1.6c
04: Boundary 1.6c/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11a
09: Boundary 1.11a/1.11g
10: Boundary 1.11g/1.12
11: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000294172
2b
ENSE00001198395
chr11:
62572964-62572801
164
NXF1_HUMAN
1-10
10
0
-
-
1.4e
ENST00000294172
4e
ENSE00001063544
chr11:
62571450-62571264
187
NXF1_HUMAN
10-72
63
0
-
-
1.4g
ENST00000294172
4g
ENSE00001198378
chr11:
62571044-62570891
154
NXF1_HUMAN
72-123
52
2
A:118-123
-
C:117-123
-
6
-
7
-
1.5b
ENST00000294172
5b
ENSE00001198363
chr11:
62569732-62569649
84
NXF1_HUMAN
124-151
28
2
A:124-151
-
C:124-151
-
28
-
28
-
1.6c
ENST00000294172
6c
ENSE00001198351
chr11:
62569518-62569414
105
NXF1_HUMAN
152-186
35
2
A:152-186
-
C:152-186
-
35
-
35
-
1.7
ENST00000294172
7
ENSE00001198338
chr11:
62569291-62569211
81
NXF1_HUMAN
187-213
27
4
A:187-213 (gaps)
B:203-213
C:187-213 (gaps)
D:204-213
27
11
27
10
1.8
ENST00000294172
8
ENSE00001198325
chr11:
62569103-62569034
70
NXF1_HUMAN
214-237
24
4
A:214-237
B:214-237
C:214-237
D:214-237
24
24
24
24
1.9
ENST00000294172
9
ENSE00001198312
chr11:
62568889-62568801
89
NXF1_HUMAN
237-266
30
4
A:237-266
B:237-266
C:237-266
D:237-266
30
30
30
30
1.10
ENST00000294172
10
ENSE00001198304
chr11:
62568673-62568566
108
NXF1_HUMAN
267-302
36
4
A:267-302
B:267-302
C:267-302
D:267-302
36
36
36
36
1.11a
ENST00000294172
11a
ENSE00001198291
chr11:
62567958-62567849
110
NXF1_HUMAN
303-339
37
4
A:303-339
B:303-339
C:303-339
D:303-339
37
37
37
37
1.11g
ENST00000294172
11g
ENSE00001198284
chr11:
62566047-62566011
37
NXF1_HUMAN
339-351
13
4
A:339-351
B:339-351
C:339-351
D:339-351
13
13
13
13
1.12
ENST00000294172
12
ENSE00001063548
chr11:
62564858-62564790
69
NXF1_HUMAN
352-374
23
4
A:352-362
B:352-362
C:352-362
D:352-362
11
11
11
11
1.13
ENST00000294172
13
ENSE00001063546
chr11:
62564710-62564655
56
NXF1_HUMAN
375-393
19
0
-
-
1.15a
ENST00000294172
15a
ENSE00001063554
chr11:
62564039-62563932
108
NXF1_HUMAN
393-429
37
0
-
-
1.16b
ENST00000294172
16b
ENSE00001141830
chr11:
62563817-62563759
59
NXF1_HUMAN
429-449
21
0
-
-
1.17b
ENST00000294172
17b
ENSE00001141824
chr11:
62563653-62563538
116
NXF1_HUMAN
449-487
39
0
-
-
1.18
ENST00000294172
18
ENSE00001141816
chr11:
62563415-62563373
43
NXF1_HUMAN
488-502
15
0
-
-
1.19b
ENST00000294172
19b
ENSE00001274696
chr11:
62562479-62562407
73
NXF1_HUMAN
502-526
25
0
-
-
1.20c
ENST00000294172
20c
ENSE00001063547
chr11:
62561912-62561730
183
NXF1_HUMAN
526-587
62
0
-
-
1.21a
ENST00000294172
21a
ENSE00001764908
chr11:
62560173-62560113
61
NXF1_HUMAN
587-607
21
0
-
-
1.21h
ENST00000294172
21h
ENSE00001198195
chr11:
62559986-62559598
389
NXF1_HUMAN
608-619
12
0
-
-
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3rw7a1 (A:118-199)
1b: SCOP_d3rw7c1 (C:117-198)
2a: SCOP_d3rw7a2 (A:203-362)
2b: SCOP_d3rw7b_ (B:)
2c: SCOP_d3rw7c2 (C:203-362)
2d: SCOP_d3rw7d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d3rw7a1
A:118-199
1b
d3rw7c1
C:117-198
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
mRNA export factor tap
(5)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d3rw7a2
A:203-362
2b
d3rw7b_
B:
2c
d3rw7c2
C:203-362
2d
d3rw7d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (29 KB)
Header - Biol.Unit 2
Biol.Unit 3 (42 KB)
Header - Biol.Unit 3
Biol.Unit 4 (28 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3RW7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help