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3RNX
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LYSOZYME IN 30% ETHANOL
Authors
:
P. Sharma, A. K. Solanki, Ashish
Date
:
24 Apr 11 (Deposition) - 18 May 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Cytoplasmic Vesicles
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sharma, A. K. Solanki, Ashish
Crystal Structure Of Lysozyme In 30% Ethanol
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
3d: ETHANOL (EOHd)
3e: ETHANOL (EOHe)
3f: ETHANOL (EOHf)
3g: ETHANOL (EOHg)
3h: ETHANOL (EOHh)
4a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
9
Ligand/Ion
CHLORIDE ION
3
EOH
8
Ligand/Ion
ETHANOL
4
NA
1
Ligand/Ion
SODIUM ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:19 , GLY A:22 , PHE A:34 , HOH A:212
BINDING SITE FOR RESIDUE EOH A 130
02
AC2
SOFTWARE
TRP A:62 , ASP A:101 , EOH A:137
BINDING SITE FOR RESIDUE EOH A 132
03
AC3
SOFTWARE
GLY A:4 , ARG A:5 , CYS A:6 , GLU A:7
BINDING SITE FOR RESIDUE EOH A 133
04
AC4
SOFTWARE
ILE A:58 , ASN A:59 , TRP A:63 , ALA A:107 , EOH A:137
BINDING SITE FOR RESIDUE EOH A 134
05
AC5
SOFTWARE
ALA A:82 , SER A:85 , ASP A:87 , THR A:89 , ALA A:90
BINDING SITE FOR RESIDUE EOH A 135
06
AC6
SOFTWARE
ASN A:65 , SER A:72 , ARG A:73 , ASN A:74 , NA A:148 , HOH A:181
BINDING SITE FOR RESIDUE EOH A 136
07
AC7
SOFTWARE
TRP A:63 , EOH A:132 , EOH A:134
BINDING SITE FOR RESIDUE EOH A 137
08
AC8
SOFTWARE
SER A:24 , GLY A:26 , GLN A:121
BINDING SITE FOR RESIDUE CL A 138
09
AC9
SOFTWARE
ASN A:65 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , HOH A:159 , HOH A:186
BINDING SITE FOR RESIDUE CL A 139
10
BC1
SOFTWARE
GLY A:49 , SER A:50 , THR A:51 , SER A:60 , ASP A:66 , ARG A:68 , THR A:69
BINDING SITE FOR RESIDUE CL A 140
11
BC2
SOFTWARE
ARG A:73 , ASN A:74
BINDING SITE FOR RESIDUE CL A 142
12
BC3
SOFTWARE
ASN A:65 , PRO A:79
BINDING SITE FOR RESIDUE CL A 143
13
BC4
SOFTWARE
LYS A:1 , ASN A:39 , GLN A:41 , ASP A:66 , HOH A:150
BINDING SITE FOR RESIDUE CL A 144
14
BC5
SOFTWARE
GLN A:41 , THR A:43 , TYR A:53 , ARG A:68
BINDING SITE FOR RESIDUE CL A 145
15
BC6
SOFTWARE
TYR A:23 , ASN A:113
BINDING SITE FOR RESIDUE CL A 146
16
BC7
SOFTWARE
HIS A:15 , ASN A:93 , LYS A:96
BINDING SITE FOR RESIDUE ACT A 147
17
BC8
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , EOH A:136 , HOH A:159
BINDING SITE FOR RESIDUE NA A 148
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3rnxa_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d3rnxa_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lys_3rnxA01 (A:1-127)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Lysozyme
(266)
Family
:
Lys
(245)
Gallus gallus (Chicken)
(156)
1a
Lys-3rnxA01
A:1-127
[
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]
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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