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3RJL
Biol. Unit 7
Info
Asym.Unit (667 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 10 (174 KB)
Biol.Unit 11 (172 KB)
Biol.Unit 12 (171 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (92 KB)
Biol.Unit 4 (92 KB)
Biol.Unit 5 (92 KB)
Biol.Unit 6 (91 KB)
Biol.Unit 7 (91 KB)
Biol.Unit 8 (90 KB)
Biol.Unit 9 (172 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM BACILLUS LICHENIFORMIS (TARGET NYSGRC-000337)
Authors
:
Y. Patskovsky, R. Toro, R. Foti, R. D. Seidel, S. C. Almo, New York Stru Genomics Research Consortium (Nysgrc)
Date
:
15 Apr 11 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: A,D (1x)
Biol. Unit 10: B,C (1x)
Biol. Unit 11: E,G (1x)
Biol. Unit 12: F,H (1x)
Keywords
:
Proline Oxidation, Redox Control, Apoptosis, Nad Binding, Oxidoreductase, Psi-Biology, Protein Structure Initiative, New York Structural Genomics Research Consortium (Nysgrc)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, R. Foti, R. D. Seidel, S. C. Almo
Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehydrogenas From Bacillus Licheniformis
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: CADMIUM ION (CDa)
2aa: CADMIUM ION (CDaa)
2ab: CADMIUM ION (CDab)
2ac: CADMIUM ION (CDac)
2ad: CADMIUM ION (CDad)
2ae: CADMIUM ION (CDae)
2af: CADMIUM ION (CDaf)
2ag: CADMIUM ION (CDag)
2ah: CADMIUM ION (CDah)
2ai: CADMIUM ION (CDai)
2aj: CADMIUM ION (CDaj)
2ak: CADMIUM ION (CDak)
2al: CADMIUM ION (CDal)
2am: CADMIUM ION (CDam)
2an: CADMIUM ION (CDan)
2ao: CADMIUM ION (CDao)
2ap: CADMIUM ION (CDap)
2aq: CADMIUM ION (CDaq)
2ar: CADMIUM ION (CDar)
2as: CADMIUM ION (CDas)
2at: CADMIUM ION (CDat)
2au: CADMIUM ION (CDau)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
2u: CADMIUM ION (CDu)
2v: CADMIUM ION (CDv)
2w: CADMIUM ION (CDw)
2x: CADMIUM ION (CDx)
2y: CADMIUM ION (CDy)
2z: CADMIUM ION (CDz)
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Sites
(11, 11)
Info
All Sites
01: CC2 (SOFTWARE)
02: DC6 (SOFTWARE)
03: EC1 (SOFTWARE)
04: EC2 (SOFTWARE)
05: EC3 (SOFTWARE)
06: FC1 (SOFTWARE)
07: FC2 (SOFTWARE)
08: FC3 (SOFTWARE)
09: FC4 (SOFTWARE)
10: FC5 (SOFTWARE)
11: FC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
CC2
SOFTWARE
ASP C:74 , ASP G:74
BINDING SITE FOR RESIDUE CD C 543
02
DC6
SOFTWARE
ASP E:432 , ACT E:544 , ACT E:545 , HOH E:791 , HIS G:456 , HOH G:809
BINDING SITE FOR RESIDUE CD E 539
03
EC1
SOFTWARE
GLU E:436 , ASP G:455
BINDING SITE FOR RESIDUE CD E 543
04
EC2
SOFTWARE
ASP E:432 , HIS E:456 , CD E:539 , HOH E:791 , GLU G:298 , ASN G:453 , HIS G:456 , HOH G:808
BINDING SITE FOR RESIDUE ACT E 544
05
EC3
SOFTWARE
ASP E:432 , CD E:539 , ASP G:455 , HIS G:456 , ARG G:459 , HOH G:807 , HOH G:809
BINDING SITE FOR RESIDUE ACT E 545
06
FC1
SOFTWARE
GLU G:433
BINDING SITE FOR RESIDUE CD G 539
07
FC2
SOFTWARE
ASP E:299 , HIS E:456 , HOH E:550 , GLU G:298 , HOH G:806
BINDING SITE FOR RESIDUE CD G 540
08
FC3
SOFTWARE
ASP G:432 , HOH G:807 , HOH G:808 , HOH G:809
BINDING SITE FOR RESIDUE CD G 541
09
FC4
SOFTWARE
GLU G:16 , CD G:543 , HOH H:823
BINDING SITE FOR RESIDUE CD G 542
10
FC5
SOFTWARE
GLU G:23 , CD G:542 , HOH G:822 , GLU H:16 , HOH H:823
BINDING SITE FOR RESIDUE CD G 543
11
FC6
SOFTWARE
ASP G:94 , GLU G:96
BINDING SITE FOR RESIDUE CD G 544
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (G:286-293)
2: ALDEHYDE_DEHYDR_CYS (G:314-325)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ROCA_BACLD
286-293
1
-
-
-
-
-
-
G:286-293
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ROCA_BACLD
314-325
1
-
-
-
-
-
-
G:314-325
-
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3rjla_ (A:)
1b: SCOP_d3rjlb_ (B:)
1c: SCOP_d3rjlc_ (C:)
1d: SCOP_d3rjld_ (D:)
1e: SCOP_d3rjle_ (E:)
1f: SCOP_d3rjlf_ (F:)
1g: SCOP_d3rjlg_ (G:)
1h: SCOP_d3rjlh_ (H:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Bacillus licheniformis [TaxId: 279010]
(1)
1a
d3rjla_
A:
1b
d3rjlb_
B:
1c
d3rjlc_
C:
1d
d3rjld_
D:
1e
d3rjle_
E:
1f
d3rjlf_
F:
1g
d3rjlg_
G:
1h
d3rjlh_
H:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_3rjlH01 (H:46-512)
1b: PFAM_Aldedh_3rjlH02 (H:46-512)
1c: PFAM_Aldedh_3rjlH03 (H:46-512)
1d: PFAM_Aldedh_3rjlH04 (H:46-512)
1e: PFAM_Aldedh_3rjlH05 (H:46-512)
1f: PFAM_Aldedh_3rjlH06 (H:46-512)
1g: PFAM_Aldedh_3rjlH07 (H:46-512)
1h: PFAM_Aldedh_3rjlH08 (H:46-512)
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)
Organisms
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)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Bacillus licheniformis (strain DSM 13 / ATCC 14580)
(1)
1a
Aldedh-3rjlH01
H:46-512
1b
Aldedh-3rjlH02
H:46-512
1c
Aldedh-3rjlH03
H:46-512
1d
Aldedh-3rjlH04
H:46-512
1e
Aldedh-3rjlH05
H:46-512
1f
Aldedh-3rjlH06
H:46-512
1g
Aldedh-3rjlH07
H:46-512
1h
Aldedh-3rjlH08
H:46-512
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Chain G
Asymmetric Unit 1
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