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(-) Description

Title :  CRYSTAL STRUCTURE OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM BACILLUS LICHENIFORMIS (TARGET NYSGRC-000337)
 
Authors :  Y. Patskovsky, R. Toro, R. Foti, R. D. Seidel, S. C. Almo, New York Stru Genomics Research Consortium (Nysgrc)
Date :  15 Apr 11  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  A (1x),D (1x)
Biol. Unit 10:  B (1x),C (1x)
Biol. Unit 11:  E (1x),G (1x)
Biol. Unit 12:  F (1x),H (1x)
Keywords :  Proline Oxidation, Redox Control, Apoptosis, Nad Binding, Oxidoreductase, Psi-Biology, Protein Structure Initiative, New York Structural Genomics Research Consortium (Nysgrc) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Foti, R. D. Seidel, S. C. Almo
Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehydrogenas From Bacillus Licheniformis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.5.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ROCA, BLI00374, BL01710
    Organism Scientific: BACILLUS LICHENIFORMIS
    Organism Taxid: 279010
    Strain: ATCC 14580, DSM 13
    Synonym: P5C DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H
Biological Unit 9 (1x): A (1x)  D (1x)    
Biological Unit 10 (1x):  B (1x)C (1x)     
Biological Unit 11 (1x):     E (1x) G (1x) 
Biological Unit 12 (1x):      F (1x) H (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 55)

Asymmetric Unit (2, 55)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CD47Ligand/IonCADMIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 9 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 10 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 11 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
Biological Unit 12 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:343 , HOH A:557 , HOH A:587 , GLU B:343BINDING SITE FOR RESIDUE CD A 539
02AC2SOFTWAREASP A:393BINDING SITE FOR RESIDUE CD A 540
03AC3SOFTWAREGLU A:352 , HOH A:803 , GLU B:16 , HOH B:802BINDING SITE FOR RESIDUE CD A 541
04AC4SOFTWARESER A:429 , GLU A:433BINDING SITE FOR RESIDUE CD A 542
05AC5SOFTWAREASP A:432 , HOH A:634 , HOH A:635 , HOH A:636 , ASP D:455 , CD D:539 , ACT D:544 , HOH D:797BINDING SITE FOR RESIDUE CD A 543
06AC6SOFTWAREASP A:455 , GLU D:436BINDING SITE FOR RESIDUE CD A 544
07AC7SOFTWAREGLU A:224 , ACT A:548 , LYS D:108BINDING SITE FOR RESIDUE CD A 545
08AC8SOFTWAREASP A:94 , GLU A:96BINDING SITE FOR RESIDUE CD A 546
09AC9SOFTWAREGLU A:298 , ASP D:299 , ASN D:453 , HIS D:456BINDING SITE FOR RESIDUE CD A 547
10BC1SOFTWARELYS A:108 , ARG A:111 , GLU A:224 , CD A:545 , GLU D:224 , HOH D:799BINDING SITE FOR RESIDUE ACT A 548
11BC2SOFTWARELYS B:108 , GLU B:224 , ACT B:543 , HOH B:638 , HOH B:639 , HOH B:801BINDING SITE FOR RESIDUE CD B 539
12BC3SOFTWAREGLU B:352 , HOH B:662 , HOH B:663 , HOH B:664BINDING SITE FOR RESIDUE CD B 540
13BC4SOFTWAREASP B:297 , GLU B:298 , HIS B:456 , GLU C:298BINDING SITE FOR RESIDUE CD B 541
14BC5SOFTWAREGLU B:400 , HOH B:659 , HOH B:660 , HOH B:661BINDING SITE FOR RESIDUE CD B 542
15BC6SOFTWARELYS B:108 , GLU B:224 , CD B:539 , HOH B:801BINDING SITE FOR RESIDUE ACT B 543
16BC7SOFTWARELYS B:108 , HOH B:800 , GLU C:224 , HOH C:678BINDING SITE FOR RESIDUE CD C 539
17BC8SOFTWAREGLU C:343BINDING SITE FOR RESIDUE CD C 540
18BC9SOFTWAREGLU C:433BINDING SITE FOR RESIDUE CD C 541
19CC1SOFTWAREGLU C:23 , HOH C:677 , HOH C:812 , GLU D:16 , CD D:543BINDING SITE FOR RESIDUE CD C 542
20CC2SOFTWAREASP C:74 , ASP G:74BINDING SITE FOR RESIDUE CD C 543
21CC3SOFTWAREASP C:94 , GLU C:96BINDING SITE FOR RESIDUE CD C 544
22CC4SOFTWAREGLU C:162 , HOH C:825 , HOH C:826BINDING SITE FOR RESIDUE CD C 545
23CC5SOFTWAREASP C:374 , HOH C:827 , HOH C:828 , HOH C:829BINDING SITE FOR RESIDUE CD C 546
24CC6SOFTWAREASP C:432 , CD C:549 , HOH C:813 , HOH C:814 , HOH C:816 , HOH C:830BINDING SITE FOR RESIDUE CD C 547
25CC7SOFTWAREGLU B:436 , ASP C:455BINDING SITE FOR RESIDUE CD C 548
26CC8SOFTWAREASP B:432 , HIS C:456 , CD C:547 , HOH C:816 , HOH C:817 , HOH C:818BINDING SITE FOR RESIDUE CD C 549
27CC9SOFTWAREHIS A:456 , CD A:543 , ASP D:432 , ACT D:544 , HOH D:797BINDING SITE FOR RESIDUE CD D 539
28DC1SOFTWAREGLU D:224 , HOH D:716 , HOH D:718 , HOH D:798 , HOH D:799BINDING SITE FOR RESIDUE CD D 540
29DC2SOFTWAREASP A:432 , ASP D:455BINDING SITE FOR RESIDUE CD D 541
30DC3SOFTWAREHOH A:550 , ASP D:94 , GLU D:96 , HOH D:571BINDING SITE FOR RESIDUE CD D 542
31DC4SOFTWAREGLU C:16 , CD C:542 , ARG D:19BINDING SITE FOR RESIDUE CD D 543
32DC5SOFTWAREARG A:459 , CD A:543 , HOH A:635 , ARG D:459 , CD D:539BINDING SITE FOR RESIDUE ACT D 544
33DC6SOFTWAREASP E:432 , ACT E:544 , ACT E:545 , HOH E:791 , HIS G:456 , HOH G:809BINDING SITE FOR RESIDUE CD E 539
34DC7SOFTWAREGLU E:352 , HOH E:794 , GLU F:16 , HOH F:795BINDING SITE FOR RESIDUE CD E 540
35DC8SOFTWAREGLU E:343 , HOH E:555 , GLU F:343 , HOH F:583BINDING SITE FOR RESIDUE CD E 541
36DC9SOFTWAREGLU E:224 , HOH E:819 , HOH E:820 , HOH E:821BINDING SITE FOR RESIDUE CD E 542
37EC1SOFTWAREGLU E:436 , ASP G:455BINDING SITE FOR RESIDUE CD E 543
38EC2SOFTWAREASP E:432 , HIS E:456 , CD E:539 , HOH E:791 , GLU G:298 , ASN G:453 , HIS G:456 , HOH G:808BINDING SITE FOR RESIDUE ACT E 544
39EC3SOFTWAREASP E:432 , CD E:539 , ASP G:455 , HIS G:456 , ARG G:459 , HOH G:807 , HOH G:809BINDING SITE FOR RESIDUE ACT E 545
40EC4SOFTWAREACT F:543 , ACT F:544 , HOH F:824 , CD H:539 , ACT H:542BINDING SITE FOR RESIDUE CD F 539
41EC5SOFTWAREGLU F:224 , LYS H:108BINDING SITE FOR RESIDUE CD F 540
42EC6SOFTWAREASP F:393BINDING SITE FOR RESIDUE CD F 541
43EC7SOFTWAREASP F:455BINDING SITE FOR RESIDUE CD F 542
44EC8SOFTWAREGLU F:298 , HIS F:456 , CD F:539 , HOH F:824 , HIS H:456 , CD H:539BINDING SITE FOR RESIDUE ACT F 543
45EC9SOFTWAREASP F:432 , ARG F:459 , CD F:539 , HOH F:824 , ASP H:455 , ACT H:542BINDING SITE FOR RESIDUE ACT F 544
46FC1SOFTWAREGLU G:433BINDING SITE FOR RESIDUE CD G 539
47FC2SOFTWAREASP E:299 , HIS E:456 , HOH E:550 , GLU G:298 , HOH G:806BINDING SITE FOR RESIDUE CD G 540
48FC3SOFTWAREASP G:432 , HOH G:807 , HOH G:808 , HOH G:809BINDING SITE FOR RESIDUE CD G 541
49FC4SOFTWAREGLU G:16 , CD G:543 , HOH H:823BINDING SITE FOR RESIDUE CD G 542
50FC5SOFTWAREGLU G:23 , CD G:542 , HOH G:822 , GLU H:16 , HOH H:823BINDING SITE FOR RESIDUE CD G 543
51FC6SOFTWAREASP G:94 , GLU G:96BINDING SITE FOR RESIDUE CD G 544
52FC7SOFTWAREHIS F:456 , CD F:539 , ACT F:543 , ASP H:432 , ACT H:542BINDING SITE FOR RESIDUE CD H 539
53FC8SOFTWAREGLU H:224 , HOH H:597BINDING SITE FOR RESIDUE CD H 540
54FC9SOFTWAREASP H:94 , GLU H:96 , HOH H:547BINDING SITE FOR RESIDUE CD H 541
55GC1SOFTWAREHIS F:456 , ARG F:459 , CD F:539 , ACT F:544 , ARG H:459 , CD H:539BINDING SITE FOR RESIDUE ACT H 542

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RJL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RJL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RJL)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  8A:286-293
B:286-293
C:286-293
D:286-293
E:286-293
F:286-293
G:286-293
H:286-293
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  8A:314-325
B:314-325
C:314-325
D:314-325
E:314-325
F:314-325
G:314-325
H:314-325
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1A:286-293
-
-
-
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1A:314-325
-
-
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
B:286-293
-
-
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
B:314-325
-
-
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
C:286-293
-
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
C:314-325
-
-
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
-
D:286-293
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
-
D:314-325
-
-
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
-
-
E:286-293
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
-
-
E:314-325
-
-
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
-
-
-
F:286-293
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
-
-
-
F:314-325
-
-
Biological Unit 7 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:286-293
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
-
-
-
-
G:314-325
-
Biological Unit 8 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:286-293
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  1-
-
-
-
-
-
-
H:314-325
Biological Unit 9 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  2A:286-293
-
-
D:286-293
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  2A:314-325
-
-
D:314-325
-
-
-
-
Biological Unit 10 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  2-
B:286-293
C:286-293
-
-
-
-
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  2-
B:314-325
C:314-325
-
-
-
-
-
Biological Unit 11 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  2-
-
-
-
E:286-293
-
G:286-293
-
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  2-
-
-
-
E:314-325
-
G:314-325
-
Biological Unit 12 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.ROCA_BACLD286-293
 
 
 
 
 
 
 		  2-
-
-
-
-
F:286-293
-
H:286-293
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.ROCA_BACLD314-325
 
 
 
 
 
 
 		  2-
-
-
-
-
F:314-325
-
H:314-325

(-) Exons   (0, 0)

(no "Exon" information available for 3RJL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjla_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhh...eee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhh.......eee......hhhhhhhhh..eeeeeee.hhhhhhhhhhhhhh.........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee............hhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl A   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain B from PDB  Type:PROTEIN  Length:514
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:514
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512    
           ROCA_BACLD     3 TPYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjlb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhh...eee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh......eee.......hhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee.............hhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl B   3 TPYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512    


Chain C from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjlc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeee.......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhh.......eee.......hhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee...........hhhhhheeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl C   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain D from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjld_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeee.......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhh......eee.......hhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee............hhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl D   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain E from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjle_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh..eee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhh......eee.......hhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee...........hhhhhheeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl E   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain F from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjlf_ F: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhh.......eee......hhhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee............hhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl F   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain G from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjlg_ G: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeee.......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhh.......eee.......hhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee..............eeee.....hhhhh......eeeeeee.hhhhhhhhhh......eeeee..hhhhhhhhhhhh...eeee................hhhhh.........hhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl G   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   


Chain H from PDB  Type:PROTEIN  Length:513
 aligned with ROCA_BACLD | Q65NN2 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:513
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513   
           ROCA_BACLD     4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
               SCOP domains d3rjlh_ H: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------Aldedh-3rjlH01 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------Aldedh-3rjlH02 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (2)
           Pfam domains (3) ------------------------------------------Aldedh-3rjlH03 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (3)
           Pfam domains (4) ------------------------------------------Aldedh-3rjlH04 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (4)
           Pfam domains (5) ------------------------------------------Aldedh-3rjlH05 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (5)
           Pfam domains (6) ------------------------------------------Aldedh-3rjlH06 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (6)
           Pfam domains (7) ------------------------------------------Aldedh-3rjlH07 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (7)
           Pfam domains (8) ------------------------------------------Aldedh-3rjlH08 H:46-512                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains (8)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhh......eee......hhhhhhhhh..eeeeeee.hhhhhhhhhhhhh..........eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..ee.......eee....hhhhhhhhhhhhhhhhhhheeee...ee.....ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhh...ee.eeeee..hhhhhhhhhhhh...eeee................ee.............hhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rjl H   4 PYKHEPFTNFGIEENRKAFEKALETVNNEWLGQSYPLVIDGERYETENKIVSINPANKEEVVGTVSKATQDHAEKAIQAAAKAFETWRYTDPEERAAVLFRAVAKVRRKKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGKGDDSKGYFIEPTIFADLDPKARLMQEEIFGPVVAFSKVSSFDEALEVANNTEYGLTGAVITKNRDHINRAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKTISEMF 516
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RJL)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: ALDH-like (49)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ROCA_BACLD | Q65NN2)
molecular function
    GO:0003842    1-pyrroline-5-carboxylate dehydrogenase activity    Catalysis of the reaction: 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH + H(+).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006537    glutamate biosynthetic process    The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0010133    proline catabolic process to glutamate    The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including glutamate.

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 Related Entries

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