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3RIY
Biol. Unit 2
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Asym.Unit (218 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (108 KB)
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(1)
Title
:
SIRT5 IS AN NAD-DEPENDENT PROTEIN LYSINE DEMALONYLASE AND DESUCCINYLASE
Authors
:
Y. Zhou, Q. Hao
Date
:
14 Apr 11 (Deposition) - 23 Nov 11 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Desuccinylase, Demalonylase, Posttranslational Modification, Zn- Binding Domain, Rossmann Fold Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Du, Y. Zhou, X. Su, J. J. Yu, S. Khan, H. Jiang, J. Kim, J. Woo, J. H. Kim, B. H. Choi, B. He, W. Chen, S. Zhang, R. A. Cerione, J. Auwerx, Q. Hao, H. Lin
Sirt5 Is A Nad-Dependent Protein Lysine Demalonylase And Desuccinylase
Science V. 334 806 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2a: (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-... (SLLa)
2b: (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-... (SLLb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SLL
1
Mod. Amino Acid
(2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL)AMINO]HEXANOIC ACID
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
CYS B:166 , CYS B:169 , CYS B:207 , CYS B:212
BINDING SITE FOR RESIDUE ZN B 1002
2
AC4
SOFTWARE
ALA B:59 , GLY B:60 , GLU B:64 , VAL B:67 , PRO B:68 , THR B:69 , PHE B:70 , ARG B:71 , GLN B:140 , ASN B:141 , ILE B:142 , ASP B:143 , HIS B:158 , GLY B:249 , THR B:250 , SER B:251 , ASN B:275 , THR B:276 , GLU B:277 , PRO B:292 , CYS B:293 , HOH B:309 , HOH B:383 , HOH B:385 , HOH B:421 , HOH B:458 , HOH B:486 , SLL C:9 , HOH C:199
BINDING SITE FOR RESIDUE NAD B 2002
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_029042 (F285L, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029042
F
285
L
SIR5_HUMAN
Polymorphism
9464003
B
F
285
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (B:41-302)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR5_HUMAN
41-309
1
-
B:41-302
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Exons
(0, 0)
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d3riya_ (A:)
1b: SCOP_d3riyb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Sir2 family of transcriptional regulators
(31)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3riya_
A:
1b
d3riyb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (218 KB)
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