PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3RGK
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (28 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MYOGLOBIN MUTANT K45R
Authors
:
S. R. Hubbard
Date
:
08 Apr 11 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Heme, Oxygen Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Hubbard, S. G. Lambright, S. G. Boxer, W. A. Hendrickson
X-Ray Crystal Structure Of A Recombinant Human Myoglobin Mutant At 2. 8 A Resolution
J. Mol. Biol. V. 20 215 1990
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:42 , PHE A:43 , ARG A:45 , HIS A:48 , GLU A:54 , ALA A:57 , HIS A:64 , VAL A:68 , LEU A:89 , SER A:92 , HIS A:93 , HIS A:97 , ILE A:99 , TYR A:103 , PHE A:138 , HOH A:200 , HOH A:207 , HOH A:211 , HOH A:219 , HOH A:290
BINDING SITE FOR RESIDUE HEM A 154
2
AC2
SOFTWARE
LYS A:79 , HIS A:81 , LYS A:102 , TYR A:103 , LYS A:147 , HOH A:212
BINDING SITE FOR RESIDUE SO4 A 300
3
AC3
SOFTWARE
ARG A:45 , LYS A:63 , HIS A:64 , THR A:67 , HOH A:267
BINDING SITE FOR RESIDUE SO4 A 301
4
AC4
SOFTWARE
LYS A:34 , SER A:51 , GLU A:52 , ASP A:53 , LYS A:96
BINDING SITE FOR RESIDUE SO4 A 302
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003180 (E54K, chain A, )
2: VAR_003181 (K133N, chain A, )
3: VAR_003182 (R139Q, chain A, )
4: VAR_003183 (R139W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003180
E
55
K
MYG_HUMAN
Polymorphism
---
A
E
54
K
2
UniProt
VAR_003181
K
134
N
MYG_HUMAN
Polymorphism
---
A
K
133
N
3
UniProt
VAR_003182
R
140
Q
MYG_HUMAN
Polymorphism
142225854
A
R
139
Q
4
UniProt
VAR_003183
R
140
W
MYG_HUMAN
Polymorphism
---
A
R
139
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:2-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
MYG_HUMAN
3-148
1
A:2-147
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.8e (A:1-31)
Exon 1.10b (A:31-105)
Exon 1.11d (A:106-149)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8b/1.8e
2: Boundary 1.8e/1.10b
3: Boundary 1.10b/1.11d
4: Boundary 1.11d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.8b
ENST00000397328
8b
ENSE00001528218
chr22:
36013555-36013409
147
MYG_HUMAN
-
0
0
-
-
1.8e
ENST00000397328
8e
ENSE00000880019
chr22:
36013312-36013210
103
MYG_HUMAN
1-32
32
1
A:1-31
31
1.10b
ENST00000397328
10b
ENSE00002190375
chr22:
36007153-36006931
223
MYG_HUMAN
32-106
75
1
A:31-105
75
1.11d
ENST00000397328
11d
ENSE00001106915
chr22:
36003490-36002811
680
MYG_HUMAN
107-154
48
1
A:106-149
44
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3rgka_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Myoglobin
(324)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3rgka_
A:
[
close SCOP info
]
CATH Domains
(0, 0 ; only for superseded entry 2MM1: 1,1)
Info
all CATH domains
1a: CATH_2mm1A00 ()
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Globin_3rgkA01 (A:6-112)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Globin
(291)
Family
:
Globin
(264)
Homo sapiens (Human)
(107)
1a
Globin-3rgkA01
A:6-112
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (33 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3RGK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
