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Getting 'Biological Unit' information from database.
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3QU6
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (19 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IRF-3 DBD FREE FORM
Authors
:
P. E. De Ioannes, C. R. Escalante, A. K. Aggarwal
Date
:
23 Feb 11 (Deposition) - 01 Jun 11 (Release) - 14 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Helix-Turn-Helix, Gene Regulation, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. De Ioannes, C. R. Escalante, A. K. Aggarwal
Structures Of Apo Irf-3 And Irf-7 Dna Binding Domains: Effect Of Loop L1 On Dna Binding.
Nucleic Acids Res. V. 39 7300 2011
[
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
NA
3
Ligand/Ion
SODIUM ION
3
ZN
9
Ligand/Ion
ZINC ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:59 , CL A:123 , VAL C:13 , ASP C:17 , HOH C:155
BINDING SITE FOR RESIDUE ZN A 114
02
AC2
SOFTWARE
VAL A:13 , ASP A:17 , CL A:119 , HOH A:164 , GLU B:59
BINDING SITE FOR RESIDUE ZN A 115
03
AC3
SOFTWARE
ASP A:99 , HIS A:101 , CL A:120 , GLU B:94
BINDING SITE FOR RESIDUE ZN A 116
04
AC4
SOFTWARE
GLU A:94 , HIS A:104 , ASP B:102 , CL B:116
BINDING SITE FOR RESIDUE ZN A 117
05
AC5
SOFTWARE
ARG A:96 , ASP A:102 , HIS A:104 , GLU B:94 , ARG B:96 , HIS B:104 , ZN B:114
BINDING SITE FOR RESIDUE CL A 118
06
AC6
SOFTWARE
ASP A:17 , ZN A:115 , HOH A:166 , PHE B:51 , GLN B:55 , GLU B:59
BINDING SITE FOR RESIDUE CL A 119
07
AC7
SOFTWARE
ASP A:99 , HIS A:101 , ZN A:116 , GLU B:94
BINDING SITE FOR RESIDUE CL A 120
08
AC8
SOFTWARE
GLY A:23 , HOH A:137 , GLY B:23 , HOH B:131
BINDING SITE FOR RESIDUE NA A 121
09
AC9
SOFTWARE
ASP A:50 , GLY A:52 , GLN A:55
BINDING SITE FOR RESIDUE NA A 122
10
BC1
SOFTWARE
ASP A:102 , CL A:118 , GLU B:94 , HIS B:104
BINDING SITE FOR RESIDUE ZN B 114
11
BC2
SOFTWARE
PHE A:51 , GLN A:55 , GLU A:59 , ZN A:114 , HOH A:134 , ASP C:17
BINDING SITE FOR RESIDUE CL A 123
12
BC3
SOFTWARE
GLU A:94 , GLU B:88 , ASP B:99 , HIS B:101
BINDING SITE FOR RESIDUE ZN B 115
13
BC4
SOFTWARE
GLU A:94 , HIS A:104 , ZN A:117 , ARG B:96 , ASP B:99 , ASP B:102 , HIS B:104
BINDING SITE FOR RESIDUE CL B 116
14
BC5
SOFTWARE
GLY B:52 , PHE B:54 , GLN B:55
BINDING SITE FOR RESIDUE NA B 117
15
BC6
SOFTWARE
ASP B:17 , GLU C:59 , CL C:118 , HOH C:165
BINDING SITE FOR RESIDUE ZN C 114
16
BC7
SOFTWARE
GLU C:94 , ASP C:102 , HIS C:104 , ILE C:106 , CL C:119
BINDING SITE FOR RESIDUE ZN C 115
17
BC8
SOFTWARE
GLU C:94 , ASP C:99 , HIS C:101 , HOH C:142
BINDING SITE FOR RESIDUE ZN C 116
18
BC9
SOFTWARE
ASP B:17 , GLU C:59 , ZN C:114 , HOH C:159
BINDING SITE FOR RESIDUE CL C 118
19
CC1
SOFTWARE
GLU C:94 , ARG C:96 , ASP C:99 , ASP C:102 , HIS C:104 , ZN C:115
BINDING SITE FOR RESIDUE CL C 119
[
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SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011901 (R96Q, chain A/B/C, )
2: VAR_049643 (Y107F, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011901
R
96
Q
IRF3_HUMAN
Polymorphism
968457
A/B/C
R
96
Q
2
UniProt
VAR_049643
Y
107
F
IRF3_HUMAN
Polymorphism
34745118
A/B/C
Y
107
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: IRF_2 (A:5-110,B:5-110,C:5-110)
2: IRF_1 (A:26-58,B:26-58,C:26-58)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IRF_2
PS51507
IRF tryptophan pentad repeat DNA-binding domain profile.
IRF3_HUMAN
5-111
3
A:5-110
B:5-110
C:5-110
2
IRF_1
PS00601
IRF tryptophan pentad repeat DNA-binding domain signature.
IRF3_HUMAN
26-58
3
A:26-58
B:26-58
C:26-58
[
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Exons
(2, 6)
Info
All Exons
Exon 1.2 (A:5-55 (gaps) | B:5-55 (gaps) | C:...)
Exon 1.3 (A:56-110 | B:56-110 | C:56-110)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000377139
1a
ENSE00001741588
chr19:
50169132-50168888
245
IRF3_HUMAN
-
0
0
-
-
1.2
ENST00000377139
2
ENSE00001192374
chr19:
50168103-50167931
173
IRF3_HUMAN
1-55
55
3
A:5-55 (gaps)
B:5-55 (gaps)
C:5-55 (gaps)
51
51
51
1.3
ENST00000377139
3
ENSE00000720991
chr19:
50166771-50166600
172
IRF3_HUMAN
56-113
58
3
A:56-110
B:56-110
C:56-110
55
55
55
1.4
ENST00000377139
4
ENSE00001762773
chr19:
50166515-50166445
71
IRF3_HUMAN
113-136
24
0
-
-
1.5
ENST00000377139
5
ENSE00001662781
chr19:
50165874-50165682
193
IRF3_HUMAN
137-201
65
0
-
-
1.6
ENST00000377139
6
ENSE00001759095
chr19:
50165585-50165205
381
IRF3_HUMAN
201-328
128
0
-
-
1.7b
ENST00000377139
7b
ENSE00001699705
chr19:
50164085-50163970
116
IRF3_HUMAN
328-366
39
0
-
-
1.8b
ENST00000377139
8b
ENSE00001707173
chr19:
50163090-50162829
262
IRF3_HUMAN
367-427
61
0
-
-
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qu6a_ (A:)
1b: SCOP_d3qu6b_ (B:)
1c: SCOP_d3qu6c_ (C:)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Interferon regulatory factor
(8)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3qu6a_
A:
1b
d3qu6b_
B:
1c
d3qu6c_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein & NOT PROSITE
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Chain B
Chain C
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