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3QNW
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
CASPASE-6 IN COMPLEX WITH Z-VAD-FMK INHIBITOR
Authors
:
I. Mueller, M. Lamers, A. Ritchie, H. Park, C. Dominguez, I. Munoz, M. Ma A. Kiselyov
Date
:
09 Feb 11 (Deposition) - 21 Sep 11 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,X,Y (1x)
Biol. Unit 2: C,E,F,G,H,Z (1x)
Keywords
:
Cysteine Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Muller, M. B. Lamers, A. J. Ritchie, C. Dominguez, I. Munoz-Sanjuan A. Kiselyov
Structure Of Human Caspase-6 In Complex With Z-Vad-Fmk: New Peptide Binding Mode Observed For The Non-Canonical Caspase Conformation.
Bioorg. Med. Chem. Lett. V. 21 5244 2011
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: FLUOROMETHANE (CF0a)
1b: FLUOROMETHANE (CF0b)
1c: FLUOROMETHANE (CF0c)
2a: BENZYL CHLOROCARBONATE (PHQa)
2b: BENZYL CHLOROCARBONATE (PHQb)
2c: BENZYL CHLOROCARBONATE (PHQc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CF0
3
Mod. Amino Acid
FLUOROMETHANE
2
PHQ
3
Mod. Amino Acid
BENZYL CHLOROCARBONATE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:123 , CYS A:163 , ALA B:213 , GLU B:214 , GLY B:215 , TYR B:216 , TYR B:217 , SER B:218 , HIS B:219 , TRP B:227 , ALA B:269 , LYS B:272
BINDING SITE FOR CHAIN X OF Z-VAD-FMK
2
AC2
SOFTWARE
ALA C:162 , CYS C:163 , VAL D:212 , GLU D:214 , GLY D:215 , TYR D:216 , TYR D:217 , SER D:218 , HIS D:219 , TRP D:227 , VAL D:261 , LYS D:272
BINDING SITE FOR CHAIN Y OF Z-VAD-FMK
3
AC3
SOFTWARE
GLU G:123 , CYS G:163 , GLU H:214 , GLY H:215 , TYR H:216 , TYR H:217 , SER H:218 , LYS H:272
BINDING SITE FOR CHAIN Z OF Z-VAD-FMK
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029242 (E35K, chain A/C/E/G, )
2: VAR_016130 (A109T, chain A/C/E/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029242
E
35
K
CASP6_HUMAN
Polymorphism
11574697
A/C/E/G
E
35
K
2
UniProt
VAR_016130
A
109
T
CASP6_HUMAN
Polymorphism
5030674
A/C/E/G
A
109
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:43-164,C:43-163,E:43-163,G:43-16...)
2: CASPASE_HIS (A:108-122,C:108-122,E:108-122,G:10...)
3: CASPASE_CYS (A:154-164,C:154-163,E:154-163,G:15...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP6_HUMAN
43-167
4
A:43-164
C:43-163
E:43-163
G:43-163
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP6_HUMAN
108-122
4
A:108-122
C:108-122
E:108-122
G:108-122
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP6_HUMAN
154-165
4
A:154-164
C:154-163
E:154-163
G:154-163
[
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Exons
(5, 24)
Info
All Exons
Exon 1.4b (A:31-77 | - | C:31-77 | - | E:31-7...)
Exon 1.5b (A:77-103 | - | C:77-103 | - | E:77...)
Exon 1.6c (A:103-161 | - | C:103-161 | - | E:...)
Exon 1.7c (A:162-164 | B:200-215 | C:162-163 ...)
Exon 1.8d (- | B:215-292 | - | D:215-291 | - ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5b
3: Boundary 1.5b/1.6c
4: Boundary 1.6c/1.7c
5: Boundary 1.7c/1.8d
6: Boundary 1.8d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000265164
1b
ENSE00001018825
chr4:
110624629-110624512
118
CASP6_HUMAN
1-14
14
0
-
-
1.3
ENST00000265164
3
ENSE00000935048
chr4:
110619498-110619456
43
CASP6_HUMAN
14-28
15
0
-
-
1.4b
ENST00000265164
4b
ENSE00000935047
chr4:
110618924-110618778
147
CASP6_HUMAN
28-77
50
4
A:31-77
-
C:31-77
-
E:31-77
-
G:31-77
-
47
-
47
-
47
-
47
-
1.5b
ENST00000265164
5b
ENSE00000935046
chr4:
110617642-110617566
77
CASP6_HUMAN
77-103
27
4
A:77-103
-
C:77-103
-
E:77-103
-
G:77-103
-
27
-
27
-
27
-
27
-
1.6c
ENST00000265164
6c
ENSE00000935045
chr4:
110615856-110615681
176
CASP6_HUMAN
103-161
59
4
A:103-161
-
C:103-161
-
E:103-161
-
G:103-161
-
59
-
59
-
59
-
59
-
1.7c
ENST00000265164
7c
ENSE00000935044
chr4:
110612165-110612006
160
CASP6_HUMAN
162-215
54
8
A:162-164
B:200-215
C:162-163
D:200-215
E:162-163
F:202-215
G:162-163
H:202-215
3
16
2
16
2
14
2
14
1.8d
ENST00000265164
8d
ENSE00001820381
chr4:
110610724-110609898
827
CASP6_HUMAN
215-293
79
4
-
B:215-292
-
D:215-291
-
F:215-292 (gaps)
-
H:215-291 (gaps)
-
78
-
77
-
78
-
77
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
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