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3QC9
Asym. Unit
Info
Asym.Unit (659 KB)
Biol.Unit 1 (329 KB)
Biol.Unit 2 (327 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CROSS-LINKED BOVINE GRK1 T8C/N480C DOUBLE MUTANT COMPLEXED WITH ADP AND MG
Authors
:
C. -C. Huang, J. J. G. Tesmer
Date
:
15 Jan 11 (Deposition) - 16 Feb 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Enkaryotic Protein Kinase Fold, Protein Serine/Threonine Kinase, Transferase
(Keyword Search:
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Reference
:
C. C. Huang, T. Orban, B. Jastrzebska, K. Palczewski, J. J. Tesmer
Activation Of G Protein-Coupled Receptor Kinase 1 Involves Interactions Between Its N-Terminal Region And Its Kinase Domain.
Biochemistry V. 50 1940 2011
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
8
Ligand/Ion
MAGNESIUM ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:193 , GLY A:194 , ARG A:195 , GLY A:196 , GLY A:197 , VAL A:201 , ALA A:214 , LYS A:216 , MET A:264 , THR A:265 , MET A:267 , LEU A:321 , ASP A:332 , HOH A:545 , HOH A:546 , HOH A:548 , HOH A:550 , MG A:800 , MG A:801
BINDING SITE FOR RESIDUE ADP A 700
02
AC2
SOFTWARE
ASP A:332 , HOH A:545 , HOH A:546 , HOH A:547 , ADP A:700
BINDING SITE FOR RESIDUE MG A 800
03
AC3
SOFTWARE
ASP A:332 , HOH A:548 , HOH A:549 , HOH A:550 , HOH A:551 , ADP A:700
BINDING SITE FOR RESIDUE MG A 801
04
AC4
SOFTWARE
GLY A:199 , GLU A:200 , ASN A:219 , ARG A:222 , ASP A:259
BINDING SITE FOR RESIDUE GOL A 544
05
AC5
SOFTWARE
LEU B:193 , GLY B:194 , ARG B:195 , GLY B:196 , GLY B:197 , VAL B:201 , ALA B:214 , LYS B:216 , MET B:264 , THR B:265 , MET B:267 , LEU B:321 , ASP B:332 , HOH B:545 , HOH B:546 , HOH B:548 , HOH B:550 , MG B:800 , MG B:801
BINDING SITE FOR RESIDUE ADP B 700
06
AC6
SOFTWARE
ASP B:332 , HOH B:545 , HOH B:546 , HOH B:547 , ADP B:700
BINDING SITE FOR RESIDUE MG B 800
07
AC7
SOFTWARE
ASP B:332 , GLY B:334 , HOH B:548 , HOH B:549 , HOH B:550 , HOH B:551 , ADP B:700
BINDING SITE FOR RESIDUE MG B 801
08
AC8
SOFTWARE
SER B:244 , ARG B:329
BINDING SITE FOR RESIDUE GOL B 544
09
AC9
SOFTWARE
HOH B:553 , GLY C:194 , ARG C:195 , GLY C:197 , VAL C:201 , ALA C:214 , LYS C:216 , MET C:264 , THR C:265 , MET C:267 , LEU C:321 , ASP C:332 , HOH C:545 , HOH C:547 , HOH C:549 , MG C:800 , MG C:801
BINDING SITE FOR RESIDUE ADP C 700
10
BC1
SOFTWARE
HOH B:553 , ASP C:332 , HOH C:545 , HOH C:546 , ADP C:700
BINDING SITE FOR RESIDUE MG C 800
11
BC2
SOFTWARE
ASP C:332 , HOH C:547 , HOH C:548 , HOH C:549 , HOH C:550 , ADP C:700
BINDING SITE FOR RESIDUE MG C 801
12
BC3
SOFTWARE
LEU D:193 , GLY D:194 , ARG D:195 , GLY D:197 , VAL D:201 , ALA D:214 , LYS D:216 , MET D:264 , THR D:265 , MET D:267 , LEU D:321 , ASP D:332 , HOH D:544 , HOH D:545 , HOH D:546 , HOH D:547 , HOH D:549 , MG D:800 , MG D:801
BINDING SITE FOR RESIDUE ADP D 700
13
BC4
SOFTWARE
ASP D:332 , HOH D:544 , HOH D:545 , HOH D:546 , ADP D:700
BINDING SITE FOR RESIDUE MG D 800
14
BC5
SOFTWARE
ASP D:332 , HOH D:547 , HOH D:548 , HOH D:549 , HOH D:550 , ADP D:700
BINDING SITE FOR RESIDUE MG D 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 16)
Info
All PROSITE Patterns/Profiles
1: RGS (A:63-172,B:63-172,C:63-172,D:63-17...)
2: PROTEIN_KINASE_ATP (A:193-216,B:193-216,C:193-216,D:19...)
3: PROTEIN_KINASE_ST (A:310-322,B:310-322,C:310-322,D:31...)
4: AGC_KINASE_CTER (A:453-518,B:453-518,C:453-518,D:45...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RK_BOVIN
63-172
4
A:63-172
B:63-172
C:63-172
D:63-172
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
RK_BOVIN
193-216
4
A:193-216
B:193-216
C:193-216
D:193-216
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
RK_BOVIN
310-322
4
A:310-322
B:310-322
C:310-322
D:310-322
4
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
RK_BOVIN
453-518
4
A:453-518
B:453-518
C:453-518
D:453-518
[
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Exons
(7, 28)
Info
All Exons
Exon 1.1 (A:31-230 | B:31-230 | C:31-230 (ga...)
Exon 1.2 (A:231-252 | B:231-252 | C:231-252 ...)
Exon 1.6a (A:252-326 | B:252-326 | C:252-326 ...)
Exon 1.7 (A:326-354 | B:326-354 | C:326-354 ...)
Exon 1.8 (A:354-395 | B:354-395 | C:354-395 ...)
Exon 1.9 (A:396-463 | B:396-463 | C:396-463 ...)
Exon 1.10 (A:463-533 (gaps) | B:463-533 (gaps...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.6a
4: Boundary 1.6a/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000045068
1
ENSBTAE00000216442
chr12:
84918428-84919117
690
RK_BOVIN
1-230
230
4
A:31-230
B:31-230
C:31-230 (gaps)
D:31-230
200
200
200
200
1.2
ENSBTAT00000045068
2
ENSBTAE00000413180
chr12:
84920231-84920294
64
RK_BOVIN
231-252
22
4
A:231-252
B:231-252
C:231-252
D:231-252
22
22
22
22
1.6a
ENSBTAT00000045068
6a
ENSBTAE00000334122
chr12:
84924790-84925011
222
RK_BOVIN
252-326
75
4
A:252-326
B:252-326
C:252-326
D:252-326
75
75
75
75
1.7
ENSBTAT00000045068
7
ENSBTAE00000400759
chr12:
84925672-84925755
84
RK_BOVIN
326-354
29
4
A:326-354
B:326-354
C:326-354
D:326-354
29
29
29
29
1.8
ENSBTAT00000045068
8
ENSBTAE00000334116
chr12:
84936606-84936730
125
RK_BOVIN
354-395
42
4
A:354-395
B:354-395
C:354-395
D:354-395
42
42
42
42
1.9
ENSBTAT00000045068
9
ENSBTAE00000334112
chr12:
84938172-84938373
202
RK_BOVIN
396-463
68
4
A:396-463
B:396-463
C:396-463
D:396-463
68
68
68
68
1.10
ENSBTAT00000045068
10
ENSBTAE00000334107
chr12:
84939509-84939807
299
RK_BOVIN
463-561
99
4
A:463-533 (gaps)
B:463-533 (gaps)
C:463-533 (gaps)
D:463-533 (gaps)
71
71
71
71
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Pkinase_3qc9D01 (D:187-447)
1b: PFAM_Pkinase_3qc9D02 (D:187-447)
1c: PFAM_Pkinase_3qc9D03 (D:187-447)
1d: PFAM_Pkinase_3qc9D04 (D:187-447)
2a: PFAM_RGS_3qc9D05 (D:57-171)
2b: PFAM_RGS_3qc9D06 (D:57-171)
2c: PFAM_RGS_3qc9D07 (D:57-171)
2d: PFAM_RGS_3qc9D08 (D:57-171)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Bos taurus (Bovine)
(47)
1a
Pkinase-3qc9D01
D:187-447
1b
Pkinase-3qc9D02
D:187-447
1c
Pkinase-3qc9D03
D:187-447
1d
Pkinase-3qc9D04
D:187-447
Clan
:
RGS
(17)
Family
:
RGS
(16)
Bos taurus (Bovine)
(6)
2a
RGS-3qc9D05
D:57-171
2b
RGS-3qc9D06
D:57-171
2c
RGS-3qc9D07
D:57-171
2d
RGS-3qc9D08
D:57-171
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Asym.Unit (659 KB)
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