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3Q2T
Asym. Unit
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Asym.Unit (110 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CFIM68 RRM/CFIM25/RNA COMPLEX
Authors
:
Q. Yang, M. Coseno, G. M. Gilmartin, S. Doublie
Date
:
20 Dec 10 (Deposition) - 16 Feb 11 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.06
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Cfim, Cfim25, Cfim68, Cpsf5, Cpsf6, Cpsf, 3' End Processing, Rna Processing, Cleavage Factor, Nudix Protein, Protein-Protein Complex, Protein-Rna Complex, Rrm, Nudix Fold, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Yang, M. Coseno, G. M. Gilmartin, S. Doublie
Crystal Structure Of A Human Cleavage Factor Cfi(M)25/Cfi(M)68/Rna Complex Provides An Insight Into Poly(A) Site Recognition And Rna Looping.
Structure V. 19 368 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:76-201,B:76-201)
2: RRM (C:81-161,D:81-161)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
CPSF5_HUMAN
76-201
2
A:76-201
B:76-201
2
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
CPSF6_HUMAN
81-161
2
C:81-161
D:81-161
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:21-39 | B:21-39)
Exon 1.2 (A:39-106 | B:39-106)
Exon 1.3 (A:106-127 | B:106-127)
Exon 1.4 (A:128-157 (gaps) | B:128-157 (gaps...)
Exon 1.5 (A:158-183 | B:158-183)
Exon 1.6 (A:183-221 | B:183-221)
Exon 1.7 (A:221-227 | B:221-227)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000300291
1
ENSE00001482691
chr16:
56485287-56484999
289
CPSF5_HUMAN
1-39
39
2
A:21-39
B:21-39
19
19
1.2
ENST00000300291
2
ENSE00001108683
chr16:
56481901-56481701
201
CPSF5_HUMAN
39-106
68
2
A:39-106
B:39-106
68
68
1.3
ENST00000300291
3
ENSE00001108681
chr16:
56480601-56480538
64
CPSF5_HUMAN
106-127
22
2
A:106-127
B:106-127
22
22
1.4
ENST00000300291
4
ENSE00001108678
chr16:
56473658-56473569
90
CPSF5_HUMAN
128-157
30
2
A:128-157 (gaps)
B:128-157 (gaps)
30
30
1.5
ENST00000300291
5
ENSE00001108686
chr16:
56468741-56468666
76
CPSF5_HUMAN
158-183
26
2
A:158-183
B:158-183
26
26
1.6
ENST00000300291
6
ENSE00001108677
chr16:
56468357-56468243
115
CPSF5_HUMAN
183-221
39
2
A:183-221
B:183-221
39
39
1.7
ENST00000300291
7
ENSE00001108679
chr16:
56466645-56463045
3601
CPSF5_HUMAN
221-227
7
2
A:221-227
B:221-227
7
7
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NUDIX_2_3q2tB01 (B:35-222)
1b: PFAM_NUDIX_2_3q2tB02 (B:35-222)
2a: PFAM_RRM_6_3q2tD01 (D:83-153)
2b: PFAM_RRM_6_3q2tD02 (D:83-153)
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Clans
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(
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(
)
Organisms
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)
(
)
Clan
:
NUDIX
(85)
Family
:
NUDIX_2
(7)
Homo sapiens (Human)
(7)
1a
NUDIX_2-3q2tB01
B:35-222
1b
NUDIX_2-3q2tB02
B:35-222
Clan
:
RRM
(206)
Family
:
RRM_6
(14)
Homo sapiens (Human)
(12)
2a
RRM_6-3q2tD01
D:83-153
2b
RRM_6-3q2tD02
D:83-153
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