PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3PRT
Biol. Unit 1
Info
Asym.Unit (126 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (238 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MUTANT OF THE CARBOXYPEPTIDASE T
Authors
:
V. I. Timofeev, V. Kh Akparov, A. M. Grishin, I. P. Kuranova
Date
:
30 Nov 10 (Deposition) - 30 Nov 11 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Peptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
[
close entry info
]
Hetero Components
(2, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:69 , ARG A:129 , ASN A:146 , ARG A:147 , TYR A:255 , GLU A:277 , GOL A:326 , GOL A:331 , HOH A:525
BINDING SITE FOR RESIDUE SO4 A 324
02
AC2
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:204 , HOH A:525
BINDING SITE FOR RESIDUE ZN A 400
03
AC3
SOFTWARE
ASP A:56 , GLU A:57 , GLU A:61 , GLU A:104 , HOH A:555 , HOH A:556
BINDING SITE FOR RESIDUE CA A 401
04
AC4
SOFTWARE
SER A:50 , ASP A:51 , GLU A:57 , GLU A:59 , CA A:403 , HOH A:495
BINDING SITE FOR RESIDUE CA A 402
05
AC5
SOFTWARE
ASP A:51 , GLU A:57 , GLU A:59 , ASN A:101 , CA A:402 , HOH A:478
BINDING SITE FOR RESIDUE CA A 403
06
AC6
SOFTWARE
SER A:7 , TYR A:9 , GLU A:14 , HOH A:424 , HOH A:533
BINDING SITE FOR RESIDUE CA A 404
07
AC7
SOFTWARE
VAL A:16 , ASN A:20 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:342
BINDING SITE FOR RESIDUE SO4 A 325
08
AC8
SOFTWARE
ASN A:146 , SER A:215 , GLY A:251 , TYR A:255 , ALA A:257 , ASP A:262 , SO4 A:324 , HOH A:339
BINDING SITE FOR RESIDUE GOL A 326
09
AC9
SOFTWARE
PHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:527 , HOH A:552
BINDING SITE FOR RESIDUE SO4 A 327
10
BC1
SOFTWARE
TYR A:118 , ARG A:132 , HOH A:350 , HOH A:560 , HOH A:561
BINDING SITE FOR RESIDUE GOL A 328
11
BC2
SOFTWARE
LYS A:270 , HOH A:358 , HOH A:375
BINDING SITE FOR RESIDUE GOL A 329
12
BC3
SOFTWARE
ARG A:71 , LYS A:152 , CYS A:156 , HOH A:416
BINDING SITE FOR RESIDUE GOL A 330
13
BC4
SOFTWARE
ARG A:129 , THR A:205 , TYR A:206 , TYR A:255 , GLU A:277 , PHE A:287 , SO4 A:324 , HOH A:361
BINDING SITE FOR RESIDUE GOL A 331
14
BC5
SOFTWARE
ASN A:52 , VAL A:53 , GLY A:54 , THR A:55 , HOH A:412
BINDING SITE FOR RESIDUE GOL A 332
15
BC6
SOFTWARE
GLY A:295 , ARG A:296 , HOH A:355
BINDING SITE FOR RESIDUE GOL A 333
16
BC7
SOFTWARE
HIS A:10 , GLU A:77 , LEU A:80 , TYR A:81 , ASP A:84 , ILE A:294 , HOH A:467 , HOH A:537
BINDING SITE FOR RESIDUE GOL A 334
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_ZN_1 (A:60-82)
2: CARBOXYPEPT_ZN_2 (A:204-214)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_ZN_1
PS00132
Zinc carboxypeptidases, zinc-binding region 1 signature.
CBPT_THEVU
158-180
1
A:60-82
2
CARBOXYPEPT_ZN_2
PS00133
Zinc carboxypeptidases, zinc-binding region 2 signature.
CBPT_THEVU
302-312
1
A:204-214
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3prta_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Carboxypeptidase T
(12)
Protein domain
:
Carboxypeptidase T
(12)
Thermoactinomyces vulgaris [TaxId: 2026]
(12)
1a
d3prta_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (126 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (238 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3PRT
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help