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3PL9
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPINACH MINOR LIGHT-HARVESTING COMPLEX CP29 AT 2.80 ANGSTROM RESOLUTION
Authors
:
X. W. Pan, M. Li, T. Wan, L. F. Wang, C. J. Jia, Z. Q. Hou, X. L. Zhao, J. P. Zha W. R. Chang
Date
:
14 Nov 10 (Deposition) - 09 Feb 11 (Release) - 09 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cp29, Chlorophyll A-B Binding Protein, Light-Harvesting Complex, Membrane Protein, Plant, Photosynthesis, Chloroplast, Thylakoid, Photosystem Ii
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. W. Pan, M. Li, T. Wan, L. F. Wang, C. J. Jia, Z. Q. Hou, X. L. Zhao, J. P. Zhang, W. R. Chang
Structural Insights Into Energy Regulation Of Light-Harvesting Complex Cp29 From Spinach
Nat. Struct. Mol. Biol. 2011
[
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: CHLOROPHYLL B (CHLa)
1b: CHLOROPHYLL B (CHLb)
1c: CHLOROPHYLL B (CHLc)
1d: CHLOROPHYLL B (CHLd)
2a: CHLOROPHYLL A (CLAa)
2b: CHLOROPHYLL A (CLAb)
2c: CHLOROPHYLL A (CLAc)
2d: CHLOROPHYLL A (CLAd)
2e: CHLOROPHYLL A (CLAe)
2f: CHLOROPHYLL A (CLAf)
2g: CHLOROPHYLL A (CLAg)
2h: CHLOROPHYLL A (CLAh)
2i: CHLOROPHYLL A (CLAi)
3a: SN-GLYCEROL-3-PHOSPHATE (G3Pa)
4a: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGa)
4b: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGb)
5a: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTa)
6a: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXa)
7a: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CHL
4
Ligand/Ion
CHLOROPHYLL B
2
CLA
9
Ligand/Ion
CHLOROPHYLL A
3
G3P
1
Ligand/Ion
SN-GLYCEROL-3-PHOSPHATE
4
HTG
2
Ligand/Ion
HEPTYL 1-THIOHEXOPYRANOSIDE
5
LUT
1
Ligand/Ion
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
6
NEX
1
Ligand/Ion
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
7
XAT
1
Ligand/Ion
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:92 , CYS A:95 , GLU A:96 , ARG A:202 , MET A:205 , VAL A:206 , LEU A:209 , XAT A:622
BINDING SITE FOR RESIDUE CLA A 602
02
AC2
SOFTWARE
ARG A:91 , PHE A:92 , CYS A:95 , HIS A:99 , CLA A:609 , XAT A:622
BINDING SITE FOR RESIDUE CLA A 603
03
AC3
SOFTWARE
LEU A:105 , GLY A:109 , THR A:112 , VAL A:113 , THR A:117 , ALA A:124 , GLU A:128 , SER A:134 , TYR A:135 , LEU A:136 , HOH A:244 , HOH A:263 , HOH A:307 , CHL A:606 , XAT A:622 , NEX A:623
BINDING SITE FOR RESIDUE CLA A 604
04
AC4
SOFTWARE
GLY A:125 , GLU A:128 , SER A:133 , PHE A:142 , MET A:144 , LEU A:147 , ILE A:150 , GLU A:151 , ILE A:155 , TYR A:157 , GLN A:161 , HOH A:245 , HOH A:248 , HOH A:303 , HOH A:305 , CLA A:604 , CHL A:607 , XAT A:622 , NEX A:623
BINDING SITE FOR RESIDUE CHL A 606
05
AC5
SOFTWARE
GLN A:122 , ASP A:123 , GLY A:125 , LYS A:126 , LEU A:129 , MET A:144 , GLU A:151 , VAL A:152 , HOH A:245 , CHL A:606
BINDING SITE FOR RESIDUE CHL A 607
06
AC6
SOFTWARE
ILE A:98 , ARG A:101 , TRP A:102 , ILE A:158 , GLN A:161 , ARG A:162 , GLU A:165 , THR A:177 , PHE A:178 , HOH A:246 , HOH A:247 , CLA A:610
BINDING SITE FOR RESIDUE CHL A 608
07
AC7
SOFTWARE
GLU A:94 , CYS A:95 , ILE A:98 , HIS A:99 , TRP A:102 , ILE A:155 , GLY A:156 , GLU A:159 , ARG A:162 , ASN A:163 , CLA A:603
BINDING SITE FOR RESIDUE CLA A 609
08
AC8
SOFTWARE
ARG A:101 , MET A:104 , TYR A:173 , PRO A:174 , GLY A:175 , PHE A:178 , ASP A:179 , LEU A:183 , ALA A:184 , LEU A:193 , GLU A:197 , CHL A:608 , LUT A:620
BINDING SITE FOR RESIDUE CLA A 610
09
AC9
SOFTWARE
ILE A:192 , ALA A:196 , LYS A:199 , HIS A:200 , CLA A:612 , CHL A:614 , CLA A:615 , LUT A:620 , G3P A:630
BINDING SITE FOR RESIDUE CLA A 611
10
BC1
SOFTWARE
LEU A:108 , LEU A:181 , GLY A:182 , LEU A:183 , SER A:185 , LYS A:189 , HIS A:200 , LEU A:203 , CLA A:611
BINDING SITE FOR RESIDUE CLA A 612
11
BC2
SOFTWARE
VAL A:206 , GLY A:210 , GLN A:214 , ASN A:225 , HIS A:229 , THR A:236 , THR A:237 , ILE A:238 , CHL A:614 , LUT A:620
BINDING SITE FOR RESIDUE CLA A 613
12
BC3
SOFTWARE
TRP A:226 , HIS A:229 , LEU A:230 , SER A:231 , PRO A:233 , THR A:237 , ILE A:238 , CLA A:611 , CLA A:613 , CLA A:615
BINDING SITE FOR RESIDUE CHL A 614
13
BC4
SOFTWARE
LEU A:195 , LYS A:199 , ARG A:202 , VAL A:206 , TRP A:226 , CLA A:611 , CHL A:614 , XAT A:622 , G3P A:630
BINDING SITE FOR RESIDUE CLA A 615
14
BC5
SOFTWARE
MET A:104 , LEU A:108 , PHE A:178 , ASP A:179 , PRO A:180 , LEU A:181 , GLY A:182 , LEU A:183 , HIS A:200 , GLY A:207 , PHE A:211 , GLN A:214 , PRO A:222 , TRP A:226 , CLA A:610 , CLA A:611 , CLA A:613
BINDING SITE FOR RESIDUE LUT A 620
15
BC6
SOFTWARE
HIS A:99 , ALA A:106 , TRP A:121 , ALA A:124 , HOH A:244 , HOH A:265 , CLA A:602 , CLA A:603 , CLA A:604 , CHL A:606 , CLA A:615
BINDING SITE FOR RESIDUE XAT A 622
16
BC7
SOFTWARE
TRP A:102 , TYR A:135 , VAL A:154 , TYR A:157 , ILE A:158 , CLA A:604 , CHL A:606
BINDING SITE FOR RESIDUE NEX A 623
17
BC8
SOFTWARE
LYS A:199 , TRP A:226 , CLA A:611 , CLA A:615
BINDING SITE FOR RESIDUE G3P A 630
18
BC9
SOFTWARE
VAL A:152 , PHE A:160 , GLN A:161 , ALA A:164 , HTG A:632
BINDING SITE FOR RESIDUE HTG A 631
19
CC1
SOFTWARE
GLU A:165 , LEU A:166 , ASP A:167 , LYS A:170 , HTG A:631
BINDING SITE FOR RESIDUE HTG A 632
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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