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3PCF
Asym. Unit
Info
Asym.Unit (452 KB)
Biol.Unit 1 (876 KB)
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(1)
Title
:
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-FLURO-4-HYDROXYBENZOATE
Authors
:
A. M. Orville, N. Elango, J. D. Lipscomb, D. H. Ohlendorf
Date
:
27 Jun 97 (Deposition) - 07 Jan 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,M,N,O,P,Q,R (2x)
Keywords
:
Dioxygenase, Iron, Nonheme, Metalloprotein, Oxidoreductase, Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Orville, N. Elango, J. D. Lipscomb, D. H. Ohlendorf
Structures Of Competitive Inhibitor Complexes Of Protocatechuate 3, 4-Dioxygenase: Multiple Exogenous Ligand Binding Orientations Within The Active Site.
Biochemistry V. 36 10039 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
3a: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBa)
3b: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBb)
3c: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBc)
3d: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBd)
3e: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBe)
3f: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBf)
3g: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBg)
3h: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBh)
3i: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBi)
3j: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBj)
3k: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBk)
3l: 3-FLUORO-4-HYDROXYBENZOIC ACID (FHBl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
2
FE
6
Ligand/Ion
FE (III) ION
3
FHB
12
Ligand/Ion
3-FLUORO-4-HYDROXYBENZOIC ACID
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACA (UNKNOWN)
11: ACB (UNKNOWN)
12: ACC (UNKNOWN)
13: ACD (UNKNOWN)
14: ACE (UNKNOWN)
15: ACF (UNKNOWN)
16: BC1 (SOFTWARE)
17: BC2 (SOFTWARE)
18: BC3 (SOFTWARE)
19: BC4 (SOFTWARE)
20: BC5 (SOFTWARE)
21: BC6 (SOFTWARE)
22: BC7 (SOFTWARE)
23: BC8 (SOFTWARE)
24: BC9 (SOFTWARE)
25: CC1 (SOFTWARE)
26: CC2 (SOFTWARE)
27: CC3 (SOFTWARE)
28: CC4 (SOFTWARE)
29: CC5 (SOFTWARE)
30: CC6 (SOFTWARE)
31: S2M (UNKNOWN)
32: S2P (UNKNOWN)
33: VEA (UNKNOWN)
34: VEB (UNKNOWN)
35: VEC (UNKNOWN)
36: VED (UNKNOWN)
37: VEE (UNKNOWN)
38: VEF (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR M:408 , TYR M:447 , HIS M:460 , HIS M:462 , FHB M:550 , HOH M:747
BINDING SITE FOR RESIDUE FE M 600
02
AC2
SOFTWARE
TYR N:408 , TYR N:447 , HIS N:460 , HIS N:462 , FHB N:550 , HOH N:861
BINDING SITE FOR RESIDUE FE N 600
03
AC3
SOFTWARE
TYR O:408 , TYR O:447 , HIS O:460 , HIS O:462 , FHB O:550 , HOH O:851
BINDING SITE FOR RESIDUE FE O 600
04
AC4
SOFTWARE
TYR P:408 , TYR P:447 , HIS P:460 , HIS P:462 , FHB P:550 , HOH P:785
BINDING SITE FOR RESIDUE FE P 600
05
AC5
SOFTWARE
TYR Q:408 , TYR Q:447 , HIS Q:460 , HIS Q:462 , FHB Q:550 , HOH Q:776
BINDING SITE FOR RESIDUE FE Q 600
06
AC6
SOFTWARE
TYR R:408 , TYR R:447 , HIS R:460 , HIS R:462 , FHB R:550 , HOH R:897
BINDING SITE FOR RESIDUE FE R 600
07
AC7
SOFTWARE
HIS M:361 , CYS M:429 , LEU M:430 , SER M:438 , HOH M:699
BINDING SITE FOR RESIDUE BME M 601
08
AC8
SOFTWARE
THR A:12 , PRO A:15 , ARG A:133 , TYR M:324 , TYR M:408 , TYR M:447 , TRP M:449 , ARG M:457 , HIS M:460 , HIS M:462 , GLN M:477 , ILE M:491 , FE M:600 , HOH M:744 , HOH M:747
BINDING SITE FOR RESIDUE FHB M 550
09
AC9
SOFTWARE
ARG M:333 , HOH M:679 , ILE O:328
BINDING SITE FOR RESIDUE FHB M 551
10
ACA
UNKNOWN
THR A:12 , ALA A:13 , GLY A:14 , PRO A:15 , TYR A:16 , ARG A:133 , GLY A:134 , TYR M:324 , THR M:326 , TRP M:400 , TYR M:408 , TYR M:447 , PRO M:448 , TRP M:449 , ARG M:450 , ARG M:457 , HIS M:460 , HIS M:462 , GLN M:477 , ILE M:491 , FHB M:550 , FE M:600 , HOH A:605 , HOH A:606 , HOH M:624 , HOH M:631 , HOH M:632 , HOH M:744 , HOH A:848 , HOH M:747
SITE "ACA" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
11
ACB
UNKNOWN
THR B:12 , ALA B:13 , GLY B:14 , PRO B:15 , TYR B:16 , ARG B:133 , GLY B:134 , TYR N:324 , THR N:326 , TRP N:400 , TYR N:408 , TYR N:447 , PRO N:448 , TRP N:449 , ARG N:450 , ARG N:457 , HIS N:460 , HIS N:462 , GLN N:477 , ILE N:491 , FHB N:550 , FE N:600 , HOH N:705 , HOH B:606 , HOH N:729 , HOH N:738 , HOH N:739 , HOH N:857 , HOH N:860 , HOH N:861
SITE "ACB" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
12
ACC
UNKNOWN
THR C:12 , ALA C:13 , GLY C:14 , PRO C:15 , TYR C:16 , ARG C:133 , GLY C:134 , TYR O:324 , THR O:326 , TRP O:400 , TYR O:408 , TYR O:447 , PRO O:448 , TRP O:449 , ARG O:450 , ARG O:457 , HIS O:460 , HIS O:462 , GLN O:477 , ILE O:491 , FHB O:550 , FE O:600 , HOH C:605 , HOH C:606 , HOH O:643 , HOH O:659 , HOH O:660 , HOH O:843 , HOH C:848 , HOH O:851
SITE "ACC" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
13
ACD
UNKNOWN
THR D:12 , ALA D:13 , GLY D:14 , PRO D:15 , TYR D:16 , ARG D:133 , GLY D:134 , TYR P:324 , THR P:326 , TRP P:400 , TYR P:408 , TYR P:447 , PRO P:448 , TRP P:449 , ARG P:450 , ARG P:457 , HIS P:460 , HIS P:462 , GLN P:477 , ILE P:491 , FHB P:550 , FE P:600 , HOH D:605 , HOH D:606 , HOH P:662 , HOH P:670 , HOH P:671 , HOH P:781 , HOH P:784 , HOH P:785
SITE "ACD" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
14
ACE
UNKNOWN
THR E:12 , ALA E:13 , GLY E:14 , PRO E:15 , TYR E:16 , ARG E:133 , GLY E:134 , TYR Q:324 , THR Q:326 , TRP Q:400 , TYR Q:408 , TYR Q:447 , PRO Q:448 , TRP Q:449 , ARG Q:450 , ARG Q:457 , HIS Q:460 , HIS Q:462 , GLN Q:477 , ILE Q:491 , FHB Q:550 , FE Q:600 , HOH Q:626 , HOH E:606 , HOH Q:648 , HOH Q:657 , HOH Q:658 , HOH Q:772 , HOH Q:775 , HOH Q:776
SITE "ACE" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
15
ACF
UNKNOWN
THR F:12 , ALA F:13 , GLY F:14 , PRO F:15 , TYR F:16 , ARG F:133 , GLY F:134 , TYR R:324 , THR R:326 , TRP R:400 , TYR R:408 , TYR R:447 , PRO R:448 , TRP R:449 , ARG R:450 , ARG R:457 , HIS R:460 , HIS R:462 , GLN R:477 , ILE R:491 , FHB R:550 , FE R:600 , HOH F:605 , HOH F:606 , HOH R:764 , HOH R:773 , HOH R:774 , HOH R:893 , HOH R:896 , HOH R:897
SITE "ACF" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
16
BC1
SOFTWARE
HIS N:361 , CYS N:429 , SER N:438 , HOH N:809
BINDING SITE FOR RESIDUE BME N 601
17
BC2
SOFTWARE
THR B:12 , PRO B:15 , ARG B:133 , TYR N:324 , TYR N:408 , TYR N:447 , TRP N:449 , ARG N:457 , HIS N:460 , HIS N:462 , GLN N:477 , ILE N:491 , FE N:600 , HOH N:857 , HOH N:861
BINDING SITE FOR RESIDUE FHB N 550
18
BC3
SOFTWARE
PRO M:322 , ILE M:328 , ARG N:333 , HOH N:788
BINDING SITE FOR RESIDUE FHB N 551
19
BC4
SOFTWARE
HIS O:361 , CYS O:429 , SER O:438 , HOH O:766
BINDING SITE FOR RESIDUE BME O 601
20
BC5
SOFTWARE
THR C:12 , PRO C:15 , ARG C:133 , TYR O:324 , TYR O:408 , TYR O:447 , TRP O:449 , ARG O:457 , HIS O:460 , HIS O:462 , GLN O:477 , ILE O:491 , FE O:600 , HOH O:843 , HOH O:851
BINDING SITE FOR RESIDUE FHB O 550
21
BC6
SOFTWARE
PRO N:322 , ILE N:328 , ARG N:333 , ARG O:333 , HOH O:732
BINDING SITE FOR RESIDUE FHB O 551
22
BC7
SOFTWARE
HIS P:361 , CYS P:429 , LEU P:430 , SER P:438 , HOH P:738
BINDING SITE FOR RESIDUE BME P 601
23
BC8
SOFTWARE
THR D:12 , PRO D:15 , TYR P:324 , TYR P:408 , TYR P:447 , TRP P:449 , ARG P:457 , HIS P:460 , HIS P:462 , GLN P:477 , ILE P:491 , FE P:600 , HOH P:781 , HOH P:785
BINDING SITE FOR RESIDUE FHB P 550
24
BC9
SOFTWARE
ARG P:333 , HOH P:717 , ILE R:328 , ARG R:333
BINDING SITE FOR RESIDUE FHB P 551
25
CC1
SOFTWARE
HIS Q:361 , CYS Q:429 , LEU Q:430 , SER Q:438 , HOH Q:724
BINDING SITE FOR RESIDUE BME Q 601
26
CC2
SOFTWARE
THR E:12 , GLY E:14 , PRO E:15 , ARG E:133 , TYR Q:324 , TYR Q:447 , TRP Q:449 , ARG Q:457 , HIS Q:460 , HIS Q:462 , GLN Q:477 , ILE Q:491 , FE Q:600 , HOH Q:772 , HOH Q:776
BINDING SITE FOR RESIDUE FHB Q 550
27
CC3
SOFTWARE
ILE P:328 , ARG Q:333 , HOH Q:703
BINDING SITE FOR RESIDUE FHB Q 551
28
CC4
SOFTWARE
HIS R:361 , CYS R:429 , SER R:438 , HOH R:844
BINDING SITE FOR RESIDUE BME R 601
29
CC5
SOFTWARE
THR F:12 , PRO F:15 , ARG F:133 , TYR R:324 , TYR R:408 , TYR R:447 , TRP R:449 , ARG R:457 , HIS R:460 , HIS R:462 , GLN R:477 , ILE R:491 , FE R:600 , HOH R:893 , HOH R:897
BINDING SITE FOR RESIDUE FHB R 550
30
CC6
SOFTWARE
ILE Q:328 , ARG R:333 , HOH R:823
BINDING SITE FOR RESIDUE FHB R 551
31
S2M
UNKNOWN
LYS M:318 , LEU M:320 , PRO M:322 , ILE M:328 , PRO M:332 , ARG M:333 , GLN M:334 , FHB M:551 , HOH M:679 , HOH M:696 , HOH M:709 , HOH M:742 , LYS N:318 , LEU N:320 , PRO N:322 , ILE N:328 , PRO N:332 , ARG N:333 , GLN N:334 , FHB N:551 , HOH N:788 , HOH N:805 , HOH N:820 , HOH N:856 , LYS O:318 , LEU O:320 , PRO O:322 , ILE O:328 , PRO O:332 , ARG O:333 , GLN O:334 , FHB O:551 , HOH O:732 , HOH O:759 , HOH O:782 , HOH O:840
SECONDARY THREE-FOLD SITE BETWEEN M, N, O CHAINS.
32
S2P
UNKNOWN
LYS P:318 , LEU P:320 , PRO P:322 , ILE P:328 , PRO P:332 , ARG P:333 , GLN P:334 , FHB P:551 , HOH P:717 , HOH P:735 , HOH P:748 , HOH P:780 , LYS Q:318 , LEU Q:320 , PRO Q:322 , ILE Q:328 , PRO Q:332 , ARG Q:333 , GLN Q:334 , FHB Q:551 , HOH Q:703 , HOH Q:720 , HOH Q:734 , HOH Q:771 , LYS R:318 , LEU R:320 , PRO R:322 , ILE R:328 , PRO R:332 , ARG R:333 , GLN R:334 , FHB R:551 , HOH R:823 , HOH R:841 , HOH R:854 , HOH R:892
SECONDARY THREE-FOLD SITE BETWEEN P, Q, R CHAINS.
33
VEA
UNKNOWN
TYR A:79 , VAL A:114 , ASN A:115 , ASN A:116 , ALA A:117 , ALA A:118 , MET A:122 , HIS A:125 , ASN A:127 , ARG A:142 , VAL A:157 , ASP M:304 , ARG M:307 , ILE M:339 , PRO M:340 , GLN M:341 , SER M:342 , ILE M:343 , SER M:344 , GLU M:345 , HOH A:646 , HOH A:655 , HOH M:636 , HOH A:673 , HOH M:642 , HOH A:683 , HOH M:659 , HOH A:725 , HOH A:795
SITE "VEA" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
34
VEB
UNKNOWN
TYR B:79 , VAL B:114 , ASN B:115 , ASN B:116 , ALA B:117 , ALA B:118 , MET B:122 , HIS B:125 , ASN B:127 , ARG B:142 , VAL B:157 , ASP N:304 , ARG N:307 , ILE N:339 , PRO N:340 , GLN N:341 , SER N:342 , ILE N:343 , SER N:344 , GLU N:345 , HOH B:646 , HOH N:736 , HOH N:743 , HOH B:673 , HOH N:751 , HOH B:683 , HOH N:767 , HOH B:725 , HOH B:795
SITE "VEB" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
35
VEC
UNKNOWN
TYR C:79 , VAL C:114 , ASN C:115 , ASN C:116 , ALA C:117 , ALA C:118 , MET C:122 , HIS C:125 , ASN C:127 , ARG C:142 , VAL C:157 , ASP O:304 , ARG O:307 , ILE O:339 , PRO O:340 , GLN O:341 , SER O:342 , ILE O:343 , SER O:344 , GLU O:345 , HOH C:646 , HOH O:655 , HOH O:666 , HOH C:673 , HOH O:681 , HOH C:683 , HOH O:707 , HOH C:725 , HOH O:795
SITE "VEC" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
36
VED
UNKNOWN
TYR D:79 , VAL D:114 , ASN D:115 , ASN D:116 , ALA D:117 , ALA D:118 , MET D:122 , HIS D:125 , ASN D:127 , ARG D:142 , VAL D:157 , ASP P:304 , ARG P:307 , ILE P:339 , PRO P:340 , GLN P:341 , SER P:342 , ILE P:343 , SER P:344 , GLU P:345 , HOH D:646 , HOH P:668 , HOH D:666 , HOH D:673 , HOH P:681 , HOH D:683 , HOH P:698 , HOH D:725 , HOH P:756
SITE "VED" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
37
VEE
UNKNOWN
TYR E:79 , VAL E:114 , ASN E:115 , ASN E:116 , ALA E:117 , ALA E:118 , MET E:122 , HIS E:125 , ASN E:127 , ARG E:142 , VAL E:157 , ASP Q:304 , ARG Q:307 , ILE Q:339 , PRO Q:340 , GLN Q:341 , SER Q:342 , ILE Q:343 , SER Q:344 , GLU Q:345 , HOH E:646 , HOH Q:655 , HOH Q:662 , HOH E:673 , HOH Q:669 , HOH E:683 , HOH Q:683 , HOH E:725 , HOH Q:742
SITE "VEE" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
38
VEF
UNKNOWN
TYR F:79 , VAL F:114 , ASN F:115 , ASN F:116 , ALA F:117 , ALA F:118 , MET F:122 , HIS F:125 , ASN F:127 , ARG F:142 , VAL F:157 , ASP R:304 , ARG R:307 , ILE R:339 , PRO R:340 , GLN R:341 , SER R:342 , ILE R:343 , SER R:344 , GLU R:345 , HOH F:646 , HOH R:771 , HOH R:779 , HOH F:673 , HOH R:786 , HOH F:683 , HOH R:802 , HOH F:725 , HOH F:795
SITE "VEF" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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[
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: INTRADIOL_DIOXYGENAS (A:51-79,B:51-79,C:51-79,D:51-79,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTRADIOL_DIOXYGENAS
PS00083
Intradiol ring-cleavage dioxygenases signature.
PCXA_PSEPU
52-80
6
A:51-79
B:51-79
C:51-79
D:51-79
E:51-79
F:51-79
PCXB_PSEPU
81-109
6
M:380-408
N:380-408
O:380-408
P:380-408
Q:380-408
R:380-408
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3pcfa_ (A:)
1b: SCOP_d3pcfb_ (B:)
1c: SCOP_d3pcfc_ (C:)
1d: SCOP_d3pcfd_ (D:)
1e: SCOP_d3pcfe_ (E:)
1f: SCOP_d3pcff_ (F:)
2a: SCOP_d3pcfm_ (M:)
2b: SCOP_d3pcfn_ (N:)
2c: SCOP_d3pcfo_ (O:)
2d: SCOP_d3pcfp_ (P:)
2e: SCOP_d3pcfq_ (Q:)
2f: SCOP_d3pcfr_ (R:)
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Classes
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)
(
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Folds
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Aromatic compound dioxygenase
(111)
Family
:
Aromatic compound dioxygenase
(100)
Protein domain
:
Protocatechuate-3,4-dioxygenase, alpha chain
(37)
Pseudomonas putida [TaxId: 303]
(31)
1a
d3pcfa_
A:
1b
d3pcfb_
B:
1c
d3pcfc_
C:
1d
d3pcfd_
D:
1e
d3pcfe_
E:
1f
d3pcff_
F:
Protein domain
:
Protocatechuate-3,4-dioxygenase, beta chain
(44)
Pseudomonas putida [TaxId: 303]
(31)
2a
d3pcfm_
M:
2b
d3pcfn_
N:
2c
d3pcfo_
O:
2d
d3pcfp_
P:
2e
d3pcfq_
Q:
2f
d3pcfr_
R:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3pcfM00 (M:301-536)
1b: CATH_3pcfA00 (A:1-200)
1c: CATH_3pcfB00 (B:1-200)
1d: CATH_3pcfC00 (C:1-200)
1e: CATH_3pcfD00 (D:1-200)
1f: CATH_3pcfE00 (E:1-200)
1g: CATH_3pcfF00 (F:1-200)
1h: CATH_3pcfN00 (N:301-536)
1i: CATH_3pcfO00 (O:301-536)
1j: CATH_3pcfP00 (P:301-536)
1k: CATH_3pcfQ00 (Q:301-536)
1l: CATH_3pcfR00 (R:301-536)
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Homologous Superfamily
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Pseudomonas putida. Organism_taxid: 303.
(20)
1a
3pcfM00
M:301-536
1b
3pcfA00
A:1-200
1c
3pcfB00
B:1-200
1d
3pcfC00
C:1-200
1e
3pcfD00
D:1-200
1f
3pcfE00
E:1-200
1g
3pcfF00
F:1-200
1h
3pcfN00
N:301-536
1i
3pcfO00
O:301-536
1j
3pcfP00
P:301-536
1k
3pcfQ00
Q:301-536
1l
3pcfR00
R:301-536
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Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_Dioxygenase_C_3pcfF01 (F:23-192)
1b: PFAM_Dioxygenase_C_3pcfF02 (F:23-192)
1c: PFAM_Dioxygenase_C_3pcfF03 (F:23-192)
1d: PFAM_Dioxygenase_C_3pcfF04 (F:23-192)
1e: PFAM_Dioxygenase_C_3pcfF05 (F:23-192)
1f: PFAM_Dioxygenase_C_3pcfF06 (F:23-192)
1g: PFAM_Dioxygenase_C_3pcfR01 (R:346-530)
1h: PFAM_Dioxygenase_C_3pcfR02 (R:346-530)
1i: PFAM_Dioxygenase_C_3pcfR03 (R:346-530)
1j: PFAM_Dioxygenase_C_3pcfR04 (R:346-530)
1k: PFAM_Dioxygenase_C_3pcfR05 (R:346-530)
1l: PFAM_Dioxygenase_C_3pcfR06 (R:346-530)
2a: PFAM_PCDO_beta_N_3pcfR07 (R:308-343)
2b: PFAM_PCDO_beta_N_3pcfR08 (R:308-343)
2c: PFAM_PCDO_beta_N_3pcfR09 (R:308-343)
2d: PFAM_PCDO_beta_N_3pcfR10 (R:308-343)
2e: PFAM_PCDO_beta_N_3pcfR11 (R:308-343)
2f: PFAM_PCDO_beta_N_3pcfR12 (R:308-343)
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Clan
:
Transthyretin
(88)
Family
:
Dioxygenase_C
(32)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(27)
1a
Dioxygenase_C-3pcfF01
F:23-192
1b
Dioxygenase_C-3pcfF02
F:23-192
1c
Dioxygenase_C-3pcfF03
F:23-192
1d
Dioxygenase_C-3pcfF04
F:23-192
1e
Dioxygenase_C-3pcfF05
F:23-192
1f
Dioxygenase_C-3pcfF06
F:23-192
1g
Dioxygenase_C-3pcfR01
R:346-530
1h
Dioxygenase_C-3pcfR02
R:346-530
1i
Dioxygenase_C-3pcfR03
R:346-530
1j
Dioxygenase_C-3pcfR04
R:346-530
1k
Dioxygenase_C-3pcfR05
R:346-530
1l
Dioxygenase_C-3pcfR06
R:346-530
Clan
:
no clan defined [family: PCDO_beta_N]
(26)
Family
:
PCDO_beta_N
(26)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(26)
2a
PCDO_beta_N-3pcfR07
R:308-343
2b
PCDO_beta_N-3pcfR08
R:308-343
2c
PCDO_beta_N-3pcfR09
R:308-343
2d
PCDO_beta_N-3pcfR10
R:308-343
2e
PCDO_beta_N-3pcfR11
R:308-343
2f
PCDO_beta_N-3pcfR12
R:308-343
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