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3PCE
Asym. Unit
Info
Asym.Unit (449 KB)
Biol.Unit 1 (873 KB)
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(1)
Title
:
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-HYDROXYPHENYLACETATE
Authors
:
N. Elango, A. M. Orville, J. D. Lipscomb, D. H. Ohlendorf
Date
:
29 Apr 97 (Deposition) - 29 Apr 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D,E,F,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,M,N,O,P,Q,R (2x)
Keywords
:
Dioxygenase, Iron, Nonheme, Metalloprotein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Orville, N. Elango, J. D. Lipscomb, D. H. Ohlendorf
Structures Of Competitive Inhibitor Complexes Of Protocatechuate 3, 4-Dioxygenase: Multiple Exogenous Ligand Binding Orientations Within The Active Site.
Biochemistry V. 36 10039 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: 3-HYDROXYPHENYLACETATE (3HPa)
1b: 3-HYDROXYPHENYLACETATE (3HPb)
1c: 3-HYDROXYPHENYLACETATE (3HPc)
1d: 3-HYDROXYPHENYLACETATE (3HPd)
1e: 3-HYDROXYPHENYLACETATE (3HPe)
1f: 3-HYDROXYPHENYLACETATE (3HPf)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
2c: BETA-MERCAPTOETHANOL (BMEc)
2d: BETA-MERCAPTOETHANOL (BMEd)
2e: BETA-MERCAPTOETHANOL (BMEe)
2f: BETA-MERCAPTOETHANOL (BMEf)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
3e: FE (III) ION (FEe)
3f: FE (III) ION (FEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3HP
6
Ligand/Ion
3-HYDROXYPHENYLACETATE
2
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
3
FE
6
Ligand/Ion
FE (III) ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACA (UNKNOWN)
11: ACB (UNKNOWN)
12: ACC (UNKNOWN)
13: ACD (UNKNOWN)
14: ACE (UNKNOWN)
15: ACF (UNKNOWN)
16: BC1 (SOFTWARE)
17: BC2 (SOFTWARE)
18: BC3 (SOFTWARE)
19: BC4 (SOFTWARE)
20: BC5 (SOFTWARE)
21: BC6 (SOFTWARE)
22: BC7 (SOFTWARE)
23: BC8 (SOFTWARE)
24: BC9 (SOFTWARE)
25: VEA (UNKNOWN)
26: VEB (UNKNOWN)
27: VEC (UNKNOWN)
28: VED (UNKNOWN)
29: VEE (UNKNOWN)
30: VEF (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR M:408 , TYR M:447 , HIS M:460 , HIS M:462 , 3HP M:550
BINDING SITE FOR RESIDUE FE M 600
02
AC2
SOFTWARE
TYR N:408 , TYR N:447 , HIS N:460 , HIS N:462 , 3HP N:550
BINDING SITE FOR RESIDUE FE N 600
03
AC3
SOFTWARE
TYR O:408 , TYR O:447 , HIS O:460 , HIS O:462 , 3HP O:550
BINDING SITE FOR RESIDUE FE O 600
04
AC4
SOFTWARE
TYR P:408 , TYR P:447 , HIS P:460 , HIS P:462 , 3HP P:550
BINDING SITE FOR RESIDUE FE P 600
05
AC5
SOFTWARE
TYR Q:408 , TYR Q:447 , HIS Q:460 , HIS Q:462 , 3HP Q:550
BINDING SITE FOR RESIDUE FE Q 600
06
AC6
SOFTWARE
TYR R:408 , TYR R:447 , HIS R:460 , HIS R:462 , 3HP R:550
BINDING SITE FOR RESIDUE FE R 600
07
AC7
SOFTWARE
HIS M:361 , CYS M:429 , LEU M:430 , SER M:438 , HOH M:689
BINDING SITE FOR RESIDUE BME M 601
08
AC8
SOFTWARE
PRO A:15 , TYR M:408 , TYR M:447 , TRP M:449 , ARG M:457 , HIS M:462 , ILE M:491 , FE M:600 , HOH M:741 , HOH M:742
BINDING SITE FOR RESIDUE 3HP M 550
09
AC9
SOFTWARE
HIS N:361 , CYS N:429 , SER N:438 , HOH N:693
BINDING SITE FOR RESIDUE BME N 601
10
ACA
UNKNOWN
THR A:12 , ALA A:13 , GLY A:14 , PRO A:15 , TYR A:16 , ARG A:133 , GLY A:134 , TYR M:324 , THR M:326 , TYR M:408 , TYR M:447 , TRP M:449 , ARG M:450 , ARG M:457 , HIS M:460 , HIS M:462 , GLN M:477 , ILE M:491 , FE M:600 , HOH A:205 , HOH M:623 , HOH M:630 , HOH M:631 , 3HP M:550 , HOH M:741 , HOH M:742
SITE "ACA" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
11
ACB
UNKNOWN
THR B:12 , ALA B:13 , GLY B:14 , PRO B:15 , TYR B:16 , ARG B:133 , GLY B:134 , TYR N:324 , THR N:326 , TYR N:408 , TYR N:447 , TRP N:449 , ARG N:450 , ARG N:457 , HIS N:460 , HIS N:462 , GLN N:477 , ILE N:491 , FE N:600 , HOH B:247 , HOH N:627 , HOH N:634 , HOH N:635 , 3HP N:550 , HOH N:747 , HOH N:748
SITE "ACB" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
12
ACC
UNKNOWN
THR C:12 , ALA C:13 , GLY C:14 , PRO C:15 , TYR C:16 , ARG C:133 , GLY C:134 , TYR O:324 , THR O:326 , TYR O:408 , TYR O:447 , TRP O:449 , ARG O:450 , ARG O:457 , HIS O:460 , HIS O:462 , GLN O:477 , ILE O:491 , FE O:600 , HOH C:206 , HOH O:627 , HOH O:636 , HOH O:637 , 3HP O:550 , HOH O:754 , HOH O:755
SITE "ACC" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
13
ACD
UNKNOWN
THR D:12 , ALA D:13 , GLY D:14 , PRO D:15 , TYR D:16 , ARG D:133 , GLY D:134 , TYR P:324 , THR P:326 , TYR P:408 , TYR P:447 , TRP P:449 , ARG P:450 , ARG P:457 , HIS P:460 , HIS P:462 , GLN P:477 , ILE P:491 , FE P:600 , HOH D:729 , HOH P:632 , HOH P:640 , HOH P:641 , 3HP P:550 , HOH P:749 , HOH P:750
SITE "ACD" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
14
ACE
UNKNOWN
THR E:12 , ALA E:13 , GLY E:14 , PRO E:15 , TYR E:16 , ARG E:133 , GLY E:134 , TYR Q:324 , THR Q:326 , TYR Q:408 , TYR Q:447 , TRP Q:449 , ARG Q:450 , ARG Q:457 , HIS Q:460 , HIS Q:462 , GLN Q:477 , ILE Q:491 , FE Q:600 , HOH E:206 , HOH Q:1007 , HOH Q:1022 , HOH Q:1023 , 3HP Q:550 , HOH Q:1197 , HOH Q:1198
SITE "ACE" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
15
ACF
UNKNOWN
THR F:12 , ALA F:13 , GLY F:14 , PRO F:15 , TYR F:16 , ARG F:133 , GLY F:134 , TYR R:324 , THR R:326 , TYR R:408 , TYR R:447 , TRP R:449 , ARG R:450 , ARG R:457 , HIS R:460 , HIS R:462 , GLN R:477 , ILE R:491 , FE R:600 , HOH F:1211 , HOH R:1248 , HOH R:1263 , HOH R:1264 , 3HP R:550 , HOH R:1438 , HOH R:1439
SITE "ACF" IS THE ACTIVE SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
16
BC1
SOFTWARE
TYR N:408 , TYR N:447 , TRP N:449 , ARG N:457 , HIS N:462 , ILE N:491 , FE N:600 , HOH N:747 , HOH N:748
BINDING SITE FOR RESIDUE 3HP N 550
17
BC2
SOFTWARE
HIS O:361 , CYS O:429 , SER O:438 , HOH O:697
BINDING SITE FOR RESIDUE BME O 601
18
BC3
SOFTWARE
GLY C:14 , PRO C:15 , HOH C:206 , TYR O:408 , TYR O:447 , TRP O:449 , ARG O:457 , HIS O:462 , ILE O:491 , FE O:600 , HOH O:754
BINDING SITE FOR RESIDUE 3HP O 550
19
BC4
SOFTWARE
HIS P:361 , CYS P:429 , LEU P:430 , SER P:438 , HOH P:698
BINDING SITE FOR RESIDUE BME P 601
20
BC5
SOFTWARE
GLY D:14 , PRO D:15 , TYR P:408 , TYR P:447 , TRP P:449 , ARG P:457 , HIS P:462 , ILE P:491 , FE P:600 , HOH P:749 , HOH P:750
BINDING SITE FOR RESIDUE 3HP P 550
21
BC6
SOFTWARE
HIS Q:361 , CYS Q:429 , SER Q:438 , HOH Q:1111
BINDING SITE FOR RESIDUE BME Q 601
22
BC7
SOFTWARE
GLY E:14 , PRO E:15 , TYR Q:408 , TYR Q:447 , TRP Q:449 , ARG Q:457 , HIS Q:462 , ILE Q:491 , FE Q:600 , HOH Q:1197 , HOH Q:1198
BINDING SITE FOR RESIDUE 3HP Q 550
23
BC8
SOFTWARE
HIS R:361 , CYS R:429 , LEU R:430 , SER R:438 , HOH R:1352
BINDING SITE FOR RESIDUE BME R 601
24
BC9
SOFTWARE
PRO F:15 , HOH F:1211 , TYR R:408 , TYR R:447 , TRP R:449 , ARG R:457 , HIS R:462 , ILE R:491 , FE R:600 , HOH R:1438
BINDING SITE FOR RESIDUE 3HP R 550
25
VEA
UNKNOWN
TYR A:79 , VAL A:114 , ASN A:115 , ASN A:116 , ALA A:117 , ALA A:118 , MET A:122 , HIS A:125 , ASN A:127 , ARG A:142 , VAL A:157 , ASP M:304 , ARG M:307 , ILE M:339 , PRO M:340 , GLN M:341 , SER M:342 , ILE M:343 , SER M:344 , GLU M:345 , HOH A:220 , HOH A:223 , HOH M:635 , HOH A:232 , HOH M:641 , HOH A:235 , HOH M:658 , HOH A:246 , HOH M:716
SITE "VEA" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS A AND M.
26
VEB
UNKNOWN
TYR B:79 , VAL B:114 , ASN B:115 , ASN B:116 , ALA B:117 , ALA B:118 , MET B:122 , HIS B:125 , ASN B:127 , ARG B:142 , VAL B:157 , ASP N:304 , ARG N:307 , ILE N:339 , PRO N:340 , GLN N:341 , SER N:342 , ILE N:343 , SER N:344 , GLU N:345 , HOH B:287 , HOH B:295 , HOH N:640 , HOH B:313 , HOH N:647 , HOH B:322 , HOH N:662 , HOH B:364 , HOH N:718
SITE "VEB" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS B AND N.
27
VEC
UNKNOWN
TYR C:79 , VAL C:114 , ASN C:115 , ASN C:116 , ALA C:117 , ALA C:118 , MET C:122 , HIS C:125 , ASN C:127 , ARG C:142 , VAL C:157 , ASP O:304 , ARG O:307 , ILE O:339 , PRO O:340 , GLN O:341 , SER O:342 , ILE O:343 , SER O:344 , GLU O:345 , HOH C:223 , HOH O:634 , HOH C:230 , HOH C:235 , HOH O:647 , HOH O:649 , HOH O:663 , HOH O:679 , HOH O:724
SITE "VEC" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS C AND O.
28
VED
UNKNOWN
TYR D:79 , VAL D:114 , ASN D:115 , ASN D:116 , ALA D:117 , ALA D:118 , MET D:122 , HIS D:125 , ASN D:127 , ARG D:142 , VAL D:157 , ASP P:304 , ARG P:307 , ILE P:339 , PRO P:340 , GLN P:341 , SER P:342 , ILE P:343 , SER P:344 , GLU P:345 , HOH D:769 , HOH P:638 , HOH D:788 , HOH D:795 , HOH P:651 , HOH D:804 , HOH P:667 , HOH D:846 , HOH P:725
SITE "VED" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS D AND P.
29
VEE
UNKNOWN
TYR E:79 , VAL E:114 , ASN E:115 , ASN E:116 , ALA E:117 , ALA E:118 , MET E:122 , HIS E:125 , ASN E:127 , ARG E:142 , VAL E:157 , ASP Q:304 , ARG Q:307 , ILE Q:339 , PRO Q:340 , GLN Q:341 , SER Q:342 , ILE Q:343 , SER Q:344 , GLU Q:345 , HOH E:220 , HOH E:223 , HOH E:228 , HOH E:233 , HOH Q:1043 , HOH E:236 , HOH Q:1069 , HOH E:246 , HOH E:267
SITE "VEE" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS E AND Q.
30
VEF
UNKNOWN
TYR F:79 , VAL F:114 , ASN F:115 , ASN F:116 , ALA F:117 , ALA F:118 , MET F:122 , HIS F:125 , ASN F:127 , ARG F:142 , VAL F:157 , ASP R:304 , ARG R:307 , ILE R:339 , PRO R:340 , GLN R:341 , SER R:342 , ILE R:343 , SER R:344 , GLU R:345 , HOH F:1251 , HOH F:1259 , HOH R:1270 , HOH F:1277 , HOH R:1284 , HOH F:1286 , HOH R:1310 , HOH F:1328 , HOH R:1396
SITE "VEF" IS THE VESTIGIAL SITE OF THE PROTOMER CONSISTING OF CHAINS F AND R.
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: INTRADIOL_DIOXYGENAS (A:51-79,B:51-79,C:51-79,D:51-79,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTRADIOL_DIOXYGENAS
PS00083
Intradiol ring-cleavage dioxygenases signature.
PCXA_PSEPU
52-80
6
A:51-79
B:51-79
C:51-79
D:51-79
E:51-79
F:51-79
PCXB_PSEPU
81-109
6
M:380-408
N:380-408
O:380-408
P:380-408
Q:380-408
R:380-408
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3pcea_ (A:)
1b: SCOP_d3pceb_ (B:)
1c: SCOP_d3pcec_ (C:)
1d: SCOP_d3pced_ (D:)
1e: SCOP_d3pcee_ (E:)
1f: SCOP_d3pcef_ (F:)
2a: SCOP_d3pcem_ (M:)
2b: SCOP_d3pcen_ (N:)
2c: SCOP_d3pceo_ (O:)
2d: SCOP_d3pcep_ (P:)
2e: SCOP_d3pceq_ (Q:)
2f: SCOP_d3pcer_ (R:)
View:
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Classes
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)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Aromatic compound dioxygenase
(111)
Family
:
Aromatic compound dioxygenase
(100)
Protein domain
:
Protocatechuate-3,4-dioxygenase, alpha chain
(37)
Pseudomonas putida [TaxId: 303]
(31)
1a
d3pcea_
A:
1b
d3pceb_
B:
1c
d3pcec_
C:
1d
d3pced_
D:
1e
d3pcee_
E:
1f
d3pcef_
F:
Protein domain
:
Protocatechuate-3,4-dioxygenase, beta chain
(44)
Pseudomonas putida [TaxId: 303]
(31)
2a
d3pcem_
M:
2b
d3pcen_
N:
2c
d3pceo_
O:
2d
d3pcep_
P:
2e
d3pceq_
Q:
2f
d3pcer_
R:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3pceM00 (M:301-536)
1b: CATH_3pceA00 (A:1-200)
1c: CATH_3pceB00 (B:1-200)
1d: CATH_3pceC00 (C:1-200)
1e: CATH_3pceD00 (D:1-200)
1f: CATH_3pceE00 (E:1-200)
1g: CATH_3pceF00 (F:1-200)
1h: CATH_3pceN00 (N:301-536)
1i: CATH_3pceO00 (O:301-536)
1j: CATH_3pceP00 (P:301-536)
1k: CATH_3pceQ00 (Q:301-536)
1l: CATH_3pceR00 (R:301-536)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Homologous Superfamily
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Pseudomonas putida. Organism_taxid: 303.
(20)
1a
3pceM00
M:301-536
1b
3pceA00
A:1-200
1c
3pceB00
B:1-200
1d
3pceC00
C:1-200
1e
3pceD00
D:1-200
1f
3pceE00
E:1-200
1g
3pceF00
F:1-200
1h
3pceN00
N:301-536
1i
3pceO00
O:301-536
1j
3pceP00
P:301-536
1k
3pceQ00
Q:301-536
1l
3pceR00
R:301-536
[
close CATH info
]
Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_Dioxygenase_C_3pceF01 (F:23-192)
1b: PFAM_Dioxygenase_C_3pceF02 (F:23-192)
1c: PFAM_Dioxygenase_C_3pceF03 (F:23-192)
1d: PFAM_Dioxygenase_C_3pceF04 (F:23-192)
1e: PFAM_Dioxygenase_C_3pceF05 (F:23-192)
1f: PFAM_Dioxygenase_C_3pceF06 (F:23-192)
1g: PFAM_Dioxygenase_C_3pceR01 (R:346-530)
1h: PFAM_Dioxygenase_C_3pceR02 (R:346-530)
1i: PFAM_Dioxygenase_C_3pceR03 (R:346-530)
1j: PFAM_Dioxygenase_C_3pceR04 (R:346-530)
1k: PFAM_Dioxygenase_C_3pceR05 (R:346-530)
1l: PFAM_Dioxygenase_C_3pceR06 (R:346-530)
2a: PFAM_PCDO_beta_N_3pceR07 (R:308-343)
2b: PFAM_PCDO_beta_N_3pceR08 (R:308-343)
2c: PFAM_PCDO_beta_N_3pceR09 (R:308-343)
2d: PFAM_PCDO_beta_N_3pceR10 (R:308-343)
2e: PFAM_PCDO_beta_N_3pceR11 (R:308-343)
2f: PFAM_PCDO_beta_N_3pceR12 (R:308-343)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Transthyretin
(88)
Family
:
Dioxygenase_C
(32)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(27)
1a
Dioxygenase_C-3pceF01
F:23-192
1b
Dioxygenase_C-3pceF02
F:23-192
1c
Dioxygenase_C-3pceF03
F:23-192
1d
Dioxygenase_C-3pceF04
F:23-192
1e
Dioxygenase_C-3pceF05
F:23-192
1f
Dioxygenase_C-3pceF06
F:23-192
1g
Dioxygenase_C-3pceR01
R:346-530
1h
Dioxygenase_C-3pceR02
R:346-530
1i
Dioxygenase_C-3pceR03
R:346-530
1j
Dioxygenase_C-3pceR04
R:346-530
1k
Dioxygenase_C-3pceR05
R:346-530
1l
Dioxygenase_C-3pceR06
R:346-530
Clan
:
no clan defined [family: PCDO_beta_N]
(26)
Family
:
PCDO_beta_N
(26)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(26)
2a
PCDO_beta_N-3pceR07
R:308-343
2b
PCDO_beta_N-3pceR08
R:308-343
2c
PCDO_beta_N-3pceR09
R:308-343
2d
PCDO_beta_N-3pceR10
R:308-343
2e
PCDO_beta_N-3pceR11
R:308-343
2f
PCDO_beta_N-3pceR12
R:308-343
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (449 KB)
Header - Asym.Unit
Biol.Unit 1 (873 KB)
Header - Biol.Unit 1
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