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3P87
Biol. Unit 2
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Asym.Unit (241 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (234 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PCNA BOUND TO RNASEH2B PIP BOX PEPTIDE
Authors
:
D. Bubeck, M. A. Reijns, S. C. Graham, K. R. Astell, E. Y. Jones, A. P. Jack
Date
:
13 Oct 10 (Deposition) - 02 Feb 11 (Release) - 02 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,C,E,G,I,K (1x)
Biol. Unit 2: B,D,F,H,J,L (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Dna Binding, Dna Replication, Dna Repair, Sliding Clamp, Pcna Peptide Interacting Peptide (Pip) Motif, Pip-Box Motif, Dna Clamp, Processivity Factor, Rnase H2, Fen-1, Ligase, Polymerases, Helicases, Nucleases, Nucleus, Hydrolase-Dna Binding Protein Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. Bubeck, M. A. Reijns, S. C. Graham, K. R. Astell, E. Y. Jones, A. P. Jackson
Pcna Directs Type 2 Rnase H Activity On Dna Replication And Repair Substrates.
Nucleic Acids Res. V. 39 3652 2011
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_071871 (S228I, chain B/D/F, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
B/D/F
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (B:34-57,D:34-57,F:34-57)
2: PCNA_2 (B:61-79,D:61-79,F:61-79)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
3
-
B:34-57
-
D:34-57
-
F:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
3
-
B:61-79
-
D:61-79
-
F:61-79
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 18)
Info
all PFAM domains
1a: PFAM_PCNA_C_3p87F01 (F:127-254)
1b: PFAM_PCNA_C_3p87F02 (F:127-254)
1c: PFAM_PCNA_C_3p87F03 (F:127-254)
1d: PFAM_PCNA_C_3p87F04 (F:127-254)
1e: PFAM_PCNA_C_3p87F05 (F:127-254)
1f: PFAM_PCNA_C_3p87F06 (F:127-254)
2a: PFAM_PCNA_N_3p87F07 (F:1-125)
2b: PFAM_PCNA_N_3p87F08 (F:1-125)
2c: PFAM_PCNA_N_3p87F09 (F:1-125)
2d: PFAM_PCNA_N_3p87F10 (F:1-125)
2e: PFAM_PCNA_N_3p87F11 (F:1-125)
2f: PFAM_PCNA_N_3p87F12 (F:1-125)
3a: PFAM_RNase_H2_Ydr279_3p87L01 (L:291-301)
3b: PFAM_RNase_H2_Ydr279_3p87L02 (L:291-301)
3c: PFAM_RNase_H2_Ydr279_3p87L03 (L:291-301)
3d: PFAM_RNase_H2_Ydr279_3p87L04 (L:291-301)
3e: PFAM_RNase_H2_Ydr279_3p87L05 (L:291-301)
3f: PFAM_RNase_H2_Ydr279_3p87L06 (L:291-301)
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Clans
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Organisms
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(
)
Clan
:
DNA_clamp
(33)
Family
:
PCNA_C
(23)
Homo sapiens (Human)
(9)
1a
PCNA_C-3p87F01
F:127-254
1b
PCNA_C-3p87F02
F:127-254
1c
PCNA_C-3p87F03
F:127-254
1d
PCNA_C-3p87F04
F:127-254
1e
PCNA_C-3p87F05
F:127-254
1f
PCNA_C-3p87F06
F:127-254
Family
:
PCNA_N
(25)
Homo sapiens (Human)
(9)
2a
PCNA_N-3p87F07
F:1-125
2b
PCNA_N-3p87F08
F:1-125
2c
PCNA_N-3p87F09
F:1-125
2d
PCNA_N-3p87F10
F:1-125
2e
PCNA_N-3p87F11
F:1-125
2f
PCNA_N-3p87F12
F:1-125
Clan
:
no clan defined [family: RNase_H2-Ydr279]
(4)
Family
:
RNase_H2-Ydr279
(4)
Homo sapiens (Human)
(2)
3a
RNase_H2-Ydr279-3p87L01
L:291-301
3b
RNase_H2-Ydr279-3p87L02
L:291-301
3c
RNase_H2-Ydr279-3p87L03
L:291-301
3d
RNase_H2-Ydr279-3p87L04
L:291-301
3e
RNase_H2-Ydr279-3p87L05
L:291-301
3f
RNase_H2-Ydr279-3p87L06
L:291-301
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Asym.Unit (241 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Biol.Unit 2 (119 KB)
Header - Biol.Unit 2
Biol.Unit 3 (234 KB)
Header - Biol.Unit 3
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