PFAM Search:   
       by Pfam accession/ID, keyword
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  

Full view: branches of nodes matching the query are shown completely (Compact view)

(use 'Shift Left-Click' to collapse/expand all levels downwards; use 'Control Left-Click' to collapse/expand all levels upwards)
 
(-)
Clan: DNA_clamp (33)
(-)
Family: DNA_pol3_beta (8)
(-)
Escherichia coli (strain K12) (7)
1JQJB:1-120; B:1-120MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF THE BETA-DELTA COMPLEX
1JQLA:1-120MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF BETA-DELTA (1-140)
1MMIB:1-120; B:1-120E. COLI DNA POLYMERASE BETA SUBUNIT
1OK7B:1-120; B:1-120A CONSERVED PROTEIN BINDING-SITE ON BACTERIAL SLIDING CLAMPS
2POLB:1-120; B:1-120THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP
2XURB:1-120; B:1-120THE G157C MUTATION IN THE ESCHERICHIA COLI SLIDING CLAMP SPECIFICALLY AFFECTS INITIATION OF REPLICATION
3QSBB:1-120; B:1-120STRUCTURE OF E. COLI POLIIIBETA WITH (Z)-5-(1-((4'-FLUOROBIPHENYL-4-YL)METHOXYIMINO)BUTYL)-2,2-DIMETHYL-4,6-DIOXOCYCLOHEXANECARBONITRILE
(-)
Thermotoga maritima (1)
1VPKA:1-119CRYSTAL STRUCTURE OF DNA POLYMERASE III, BETA SUBUNIT (TM0262) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION
(-)
Family: DNA_pol3_beta_2 (8)
(-)
Escherichia coli (strain K12) (7)
1JQJB:129-243; B:129-243MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF THE BETA-DELTA COMPLEX
1JQLA:129-243MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF BETA-DELTA (1-140)
1MMIB:129-243; B:129-243E. COLI DNA POLYMERASE BETA SUBUNIT
1OK7B:129-243; B:129-243A CONSERVED PROTEIN BINDING-SITE ON BACTERIAL SLIDING CLAMPS
2POLB:129-243; B:129-243THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP
2XURB:129-243; B:129-243THE G157C MUTATION IN THE ESCHERICHIA COLI SLIDING CLAMP SPECIFICALLY AFFECTS INITIATION OF REPLICATION
3QSBB:129-243; B:129-243STRUCTURE OF E. COLI POLIIIBETA WITH (Z)-5-(1-((4'-FLUOROBIPHENYL-4-YL)METHOXYIMINO)BUTYL)-2,2-DIMETHYL-4,6-DIOXOCYCLOHEXANECARBONITRILE
(-)
Thermotoga maritima (1)
1VPKA:128-242CRYSTAL STRUCTURE OF DNA POLYMERASE III, BETA SUBUNIT (TM0262) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION
(-)
Family: DNA_pol3_beta_3 (8)
(-)
Escherichia coli (strain K12) (7)
1JQJB:245-365; B:245-365MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF THE BETA-DELTA COMPLEX
1JQLA:245-365MECHANISM OF PROCESSIVITY CLAMP OPENING BY THE DELTA SUBUNIT WRENCH OF THE CLAMP LOADER COMPLEX OF E. COLI DNA POLYMERASE III: STRUCTURE OF BETA-DELTA (1-140)
1MMIB:245-365; B:245-365E. COLI DNA POLYMERASE BETA SUBUNIT
1OK7B:245-365; B:245-365A CONSERVED PROTEIN BINDING-SITE ON BACTERIAL SLIDING CLAMPS
2POLB:245-365; B:245-365THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP
2XURB:245-364; B:245-364THE G157C MUTATION IN THE ESCHERICHIA COLI SLIDING CLAMP SPECIFICALLY AFFECTS INITIATION OF REPLICATION
3QSBB:245-365; B:245-365STRUCTURE OF E. COLI POLIIIBETA WITH (Z)-5-(1-((4'-FLUOROBIPHENYL-4-YL)METHOXYIMINO)BUTYL)-2,2-DIMETHYL-4,6-DIOXOCYCLOHEXANECARBONITRILE
(-)
Thermotoga maritima (1)
1VPKA:244-364CRYSTAL STRUCTURE OF DNA POLYMERASE III, BETA SUBUNIT (TM0262) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION
(-)
Family: PCNA_C (23)
(-)
Arabidopsis thaliana (Mouse-ear cress) (2)
2ZVVB:127-254; B:127-254CRYSTAL STRUCTURE OF PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1 AND SHORT PEPTIDE FROM HUMAN P21
2ZVWH:127-254; H:127-254; H:127-254; H:127-254; H:127-254; H:127-254; H:127-254; H:127-254CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN 2 AND SHORT PEPTIDE FROM HUMAN P21
(-)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (4)
1RWZA:121-241CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) FROM A. FULGIDUS
1RXMA:121-241C-TERMINAL REGION OF FEN-1 BOUND TO A. FULGIDUS PCNA
1RXZA:121-241C-TERMINAL REGION OF A. FULGIDUS FEN-1 COMPLEXED WITH A. FULGIDUS PCNA
3P83C:121-241; C:121-241; C:121-241STRUCTURE OF THE PCNA:RNASE HII COMPLEX FROM ARCHAEOGLOBUS FULGIDUS.
(-)
Entamoeba histolytica (1)
3P91A:128-254CRYSTAL STRUCTURE OF PROLIFERATING CELLULAR NUCLEAR ANTIGEN FROM ENTAMOEBA HISTOLYTICA
(-)
Homo sapiens (Human) (9)
1U76E:127-254; E:127-254; E:127-254CRYSTAL STRUCTURE OF HPCNA BOUND TO RESIDUES 452-466 OF THE DNA POLYMERASE-DELTA-P66 SUBUNIT
1U7BA:127-254CRYSTAL STRUCTURE OF HPCNA BOUND TO RESIDUES 331-350 OF THE FLAP ENDONUCLEASE-1 (FEN1)
1UL1C:127-254; C:127-254; C:127-254CRYSTAL STRUCTURE OF THE HUMAN FEN1-PCNA COMPLEX
1VYMC:127-254; C:127-254; C:127-254NATIVE HUMAN PCNA
1W60B:127-254; B:127-254NATIVE HUMAN PCNA
2ZVKC:127-254; C:127-254; C:127-254CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE ETA FRAGMENT
2ZVLF:127-254; F:127-254; F:127-254; F:127-254; F:127-254; F:127-254CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE KAPPA FRAGMENT
2ZVMC:127-254; C:127-254; C:127-254CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE IOTA FRAGMENT
3P87F:127-254; F:127-254; F:127-254; F:127-254; F:127-254; F:127-254STRUCTURE OF HUMAN PCNA BOUND TO RNASEH2B PIP BOX PEPTIDE
(-)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (6)
1PLQA:127-254CRYSTAL STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE PROCESSIVITY FACTOR PCNA
1PLRA:127-254CRYSTAL STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE PROCESSIVITY FACTOR PCNA
1SXJH:127-254; H:127-254; H:127-254CRYSTAL STRUCTURE OF THE EUKARYOTIC CLAMP LOADER (REPLICATION FACTOR C, RFC) BOUND TO THE DNA SLIDING CLAMP (PROLIFERATING CELL NUCLEAR ANTIGEN, PCNA)
2OD8A:127-254STRUCTURE OF A PEPTIDE DERIVED FROM CDC9 BOUND TO PCNA
3L0XB:165-254; B:165-254STRUCTURE OF SPLIT YEAST PCNA
3PGEB:127-163; B:127-163STRUCTURE OF SUMOYLATED PCNA
(-)
Saccharomyces cerevisiae (strain YJM789) (Bakers yeast) (1)
3K4XA:394-521EUKARYOTIC SLIDING CLAMP PCNA BOUND TO DNA
(-)
Family: PCNA_N (25)
(-)
Arabidopsis thaliana (Mouse-ear cress) (2)
2ZVVB:1-125; B:1-125CRYSTAL STRUCTURE OF PROLIFERATING CELLULAR NUCLEAR ANTIGEN 1 AND SHORT PEPTIDE FROM HUMAN P21
2ZVWH:1-125; H:1-125; H:1-125; H:1-125; H:1-125; H:1-125; H:1-125; H:1-125CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN 2 AND SHORT PEPTIDE FROM HUMAN P21
(-)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (4)
1RWZA:1-110CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) FROM A. FULGIDUS
1RXMA:1-110C-TERMINAL REGION OF FEN-1 BOUND TO A. FULGIDUS PCNA
1RXZA:1-110C-TERMINAL REGION OF A. FULGIDUS FEN-1 COMPLEXED WITH A. FULGIDUS PCNA
3P83C:1-110; C:1-110; C:1-110STRUCTURE OF THE PCNA:RNASE HII COMPLEX FROM ARCHAEOGLOBUS FULGIDUS.
(-)
Entamoeba histolytica (1)
3P91A:3-128CRYSTAL STRUCTURE OF PROLIFERATING CELLULAR NUCLEAR ANTIGEN FROM ENTAMOEBA HISTOLYTICA
(-)
Homo sapiens (Human) (9)
1U76E:1-125; E:1-125; E:1-125CRYSTAL STRUCTURE OF HPCNA BOUND TO RESIDUES 452-466 OF THE DNA POLYMERASE-DELTA-P66 SUBUNIT
1U7BA:1-125CRYSTAL STRUCTURE OF HPCNA BOUND TO RESIDUES 331-350 OF THE FLAP ENDONUCLEASE-1 (FEN1)
1UL1C:1-125; C:1-125; C:1-125CRYSTAL STRUCTURE OF THE HUMAN FEN1-PCNA COMPLEX
1VYMC:1-125; C:1-125; C:1-125NATIVE HUMAN PCNA
1W60B:1-125; B:1-125NATIVE HUMAN PCNA
2ZVKC:1-125; C:1-125; C:1-125CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE ETA FRAGMENT
2ZVLF:1-125; F:1-125; F:1-125; F:1-125; F:1-125; F:1-125CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE KAPPA FRAGMENT
2ZVMC:1-125; C:1-125; C:1-125CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE IOTA FRAGMENT
3P87F:1-125; F:1-125; F:1-125; F:1-125; F:1-125; F:1-125STRUCTURE OF HUMAN PCNA BOUND TO RNASEH2B PIP BOX PEPTIDE
(-)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (8)
1PLQA:1-126CRYSTAL STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE PROCESSIVITY FACTOR PCNA
1PLRA:1-126CRYSTAL STRUCTURE OF THE EUKARYOTIC DNA POLYMERASE PROCESSIVITY FACTOR PCNA
1SXJH:1-126; H:1-126; H:1-126CRYSTAL STRUCTURE OF THE EUKARYOTIC CLAMP LOADER (REPLICATION FACTOR C, RFC) BOUND TO THE DNA SLIDING CLAMP (PROLIFERATING CELL NUCLEAR ANTIGEN, PCNA)
2OD8A:1-126STRUCTURE OF A PEPTIDE DERIVED FROM CDC9 BOUND TO PCNA
3L0WA:1-126STRUCTURE OF SPLIT MONOUBIQUITINATED PCNA WITH UBIQUITIN IN POSITION TWO
3L0XA:1-126STRUCTURE OF SPLIT YEAST PCNA
3L10A:1-126STRUCTURE OF SPLIT MONOUBIQUITINATED PCNA WITH UBIQUITIN IN POSITION ONE
3PGEB:1-126STRUCTURE OF SUMOYLATED PCNA
(-)
Saccharomyces cerevisiae (strain YJM789) (Bakers yeast) (1)
3K4XA:269-393EUKARYOTIC SLIDING CLAMP PCNA BOUND TO DNA