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3OPQ
Asym. Unit
Info
Asym.Unit (426 KB)
Biol.Unit 1 (415 KB)
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(1)
Title
:
PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE WITH FRUCTOSE-6-PHOSPHATE BOUND TO THE CENTRAL CHANNEL OF THE OCTAMERIC PROTEIN STRUCTURE.
Authors
:
E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
01 Sep 10 (Deposition) - 17 Nov 10 (Release) - 17 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Phosphoribosylaminoimidazole Carboxylase, Catalyic Subunit Francisella Tularensis Subsp. Tularensis Schu S4, Pure, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Phosphoribosylaminoimidazole Carboxylase With Fructose-6-Phosphate Bound To The Central Channel Of The Octameric Protein Structure.
To Be Published
[
close entry info
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Hetero Components
(5, 79)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: FRUCTOSE -6-PHOSPHATE (F6Ra)
2b: FRUCTOSE -6-PHOSPHATE (F6Rb)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
3o: FORMIC ACID (FMTo)
3p: FORMIC ACID (FMTp)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
5g: PHOSPHATE ION (PO4g)
5h: PHOSPHATE ION (PO4h)
5i: PHOSPHATE ION (PO4i)
5j: PHOSPHATE ION (PO4j)
5k: PHOSPHATE ION (PO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
F6R
2
Ligand/Ion
FRUCTOSE -6-PHOSPHATE
3
FMT
16
Ligand/Ion
FORMIC ACID
4
MSE
49
Mod. Amino Acid
SELENOMETHIONINE
5
PO4
11
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , SER A:11 , ASP A:14 , ALA A:65 , GLY A:66 , PO4 A:165 , HOH A:203
BINDING SITE FOR RESIDUE PO4 A 164
02
AC2
SOFTWARE
SER A:38 , HIS A:40 , ARG A:41 , PO4 A:164 , HOH A:182 , HOH A:311 , PRO G:106
BINDING SITE FOR RESIDUE PO4 A 165
03
AC3
SOFTWARE
GLY A:117 , MSE A:118 , HOH A:175 , SER C:91 , THR C:92
BINDING SITE FOR RESIDUE FMT A 166
04
AC4
SOFTWARE
HIS A:70 , LEU A:71 , HOH A:182 , HOH A:203
BINDING SITE FOR RESIDUE CL A 167
05
AC5
SOFTWARE
GLY B:10 , SER B:11 , ASP B:14 , ALA B:65 , GLY B:66 , PO4 B:165 , HOH B:272 , PRO D:106
BINDING SITE FOR RESIDUE PO4 B 164
06
AC6
SOFTWARE
SER B:38 , HIS B:40 , ARG B:41 , PO4 B:164 , HOH B:182 , PRO D:106 , HOH D:206
BINDING SITE FOR RESIDUE PO4 B 165
07
AC7
SOFTWARE
ASP B:48 , TYR B:49 , THR B:52 , ARG B:56
BINDING SITE FOR RESIDUE FMT B 166
08
AC8
SOFTWARE
GLY B:117 , MSE B:118
BINDING SITE FOR RESIDUE FMT B 167
09
AC9
SOFTWARE
GLY B:29 , ASP B:136
BINDING SITE FOR RESIDUE FMT B 168
10
BC1
SOFTWARE
GLY C:10 , SER C:38 , HIS C:40 , ARG C:41 , FMT C:166 , HOH C:185 , PRO H:106
BINDING SITE FOR RESIDUE PO4 C 164
11
BC2
SOFTWARE
GLY C:117 , MSE C:118
BINDING SITE FOR RESIDUE FMT C 165
12
BC3
SOFTWARE
GLY C:10 , ASP C:14 , GLY C:66 , PO4 C:164
BINDING SITE FOR RESIDUE FMT C 166
13
BC4
SOFTWARE
GLN C:96 , GLN D:96 , GLN E:96
BINDING SITE FOR RESIDUE F6R D 167
14
BC5
SOFTWARE
GLY D:10 , SER D:11 , ASP D:14 , ALA D:65 , GLY D:66 , FMT D:168 , HOH D:196
BINDING SITE FOR RESIDUE PO4 D 164
15
BC6
SOFTWARE
GLY D:117 , MSE D:118 , HOH D:182
BINDING SITE FOR RESIDUE FMT D 165
16
BC7
SOFTWARE
ASN D:94 , ASN E:94 , ASN G:94 , ASN H:94
BINDING SITE FOR RESIDUE FMT D 166
17
BC8
SOFTWARE
PRO B:106 , SER D:38 , HIS D:40 , ARG D:41 , PO4 D:164
BINDING SITE FOR RESIDUE FMT D 168
18
BC9
SOFTWARE
GLY E:10 , SER E:11 , ASP E:14 , ALA E:65 , GLY E:66 , FMT E:166 , HOH E:383
BINDING SITE FOR RESIDUE PO4 E 164
19
CC1
SOFTWARE
GLY E:117 , MSE E:118 , HOH E:470
BINDING SITE FOR RESIDUE FMT E 165
20
CC2
SOFTWARE
GLY E:10 , SER E:38 , HIS E:40 , ARG E:41 , PO4 E:164 , PRO F:106
BINDING SITE FOR RESIDUE FMT E 166
21
CC3
SOFTWARE
GLY F:10 , SER F:11 , ASP F:14 , ALA F:65 , GLY F:66 , FMT F:166 , HOH F:221
BINDING SITE FOR RESIDUE PO4 F 164
22
CC4
SOFTWARE
GLY F:117 , MSE F:118
BINDING SITE FOR RESIDUE FMT F 165
23
CC5
SOFTWARE
SER F:38 , HIS F:40 , PO4 F:164
BINDING SITE FOR RESIDUE FMT F 166
24
CC6
SOFTWARE
GLY G:10 , SER G:11 , ASP G:14 , GLY G:66 , FMT G:166 , HOH G:178
BINDING SITE FOR RESIDUE PO4 G 164
25
CC7
SOFTWARE
MSE G:118 , HOH G:182 , HOH G:184
BINDING SITE FOR RESIDUE FMT G 165
26
CC8
SOFTWARE
PRO A:106 , SER G:38 , HIS G:40 , PO4 G:164
BINDING SITE FOR RESIDUE FMT G 166
27
CC9
SOFTWARE
GLN F:96 , GLN G:96 , HOH G:211 , GLN H:96
BINDING SITE FOR RESIDUE F6R G 167
28
DC1
SOFTWARE
GLY H:10 , SER H:11 , ASP H:14 , ALA H:65 , GLY H:66 , PO4 H:165 , HOH H:262
BINDING SITE FOR RESIDUE PO4 H 164
29
DC2
SOFTWARE
PRO C:106 , HOH C:351 , GLY H:10 , SER H:38 , ALA H:39 , HIS H:40 , ARG H:41 , PO4 H:164 , HOH H:187
BINDING SITE FOR RESIDUE PO4 H 165
30
DC3
SOFTWARE
GLY H:117 , MSE H:118 , HOH H:184
BINDING SITE FOR RESIDUE FMT H 166
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3opqa_ (A:)
1b: SCOP_d3opqc_ (C:)
1c: SCOP_d3opqd_ (D:)
1d: SCOP_d3opqe_ (E:)
1e: SCOP_d3opqf_ (F:)
1f: SCOP_d3opqg_ (G:)
1g: SCOP_d3opqh_ (H:)
1h: SCOP_d3opqb_ (B:)
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Classes
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(
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(
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(
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(
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(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
(32)
Family
:
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
(22)
Protein domain
:
automated matches
(3)
Francisella tularensis [TaxId: 119856]
(2)
1a
d3opqa_
A:
1b
d3opqc_
C:
1c
d3opqd_
D:
1d
d3opqe_
E:
1e
d3opqf_
F:
1f
d3opqg_
G:
1g
d3opqh_
H:
1h
d3opqb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_AIRC_3opqH01 (H:3-154)
1b: PFAM_AIRC_3opqH02 (H:3-154)
1c: PFAM_AIRC_3opqH03 (H:3-154)
1d: PFAM_AIRC_3opqH04 (H:3-154)
1e: PFAM_AIRC_3opqH05 (H:3-154)
1f: PFAM_AIRC_3opqH06 (H:3-154)
1g: PFAM_AIRC_3opqH07 (H:3-154)
1h: PFAM_AIRC_3opqH08 (H:3-154)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: AIRC]
(12)
Family
:
AIRC
(12)
Francisella tularensis subsp. tularensis
(2)
1a
AIRC-3opqH01
H:3-154
1b
AIRC-3opqH02
H:3-154
1c
AIRC-3opqH03
H:3-154
1d
AIRC-3opqH04
H:3-154
1e
AIRC-3opqH05
H:3-154
1f
AIRC-3opqH06
H:3-154
1g
AIRC-3opqH07
H:3-154
1h
AIRC-3opqH08
H:3-154
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Asym.Unit (426 KB)
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