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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE WITH FRUCTOSE-6-PHOSPHATE BOUND TO THE CENTRAL CHANNEL OF THE OCTAMERIC PROTEIN STRUCTURE.

Authors :   E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)

Date :   01 Sep 10 (Deposition) - 17 Nov 10 (Release) - 17 Nov 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Phosphoribosylaminoimidazole Carboxylase, Catalyic Subunit Francisella Tularensis Subsp. Tularensis Schu S4, Pure, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Phosphoribosylaminoimidazole Carboxylase With Fructose-6-Phosphate Bound To The Central Channel Of The Octameric Protein Structure.
To Be Published
PubMed: search

Molecule 1 - PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE,CATALYIC SUBUNIT
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	4.1.1.21
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-CODONPLUS(DE3)-RIPL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FTT_0896, PURE
	Organism Scientific	:	FRANCISELLA TULARENSIS SUBSP. TULARENSIS
	Organism Taxid	:	119856

		1	2	3	4	5	6	7	8
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 79)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	F6R	2	Ligand/Ion	FRUCTOSE -6-PHOSPHATE
3	FMT	16	Ligand/Ion	FORMIC ACID
4	MSE	49	Mod. Amino Acid	SELENOMETHIONINE
5	PO4	11	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:10 , SER A:11 , ASP A:14 , ALA A:65 , GLY A:66 , PO4 A:165 , HOH A:203	BINDING SITE FOR RESIDUE PO4 A 164
02	AC2	SOFTWARE	SER A:38 , HIS A:40 , ARG A:41 , PO4 A:164 , HOH A:182 , HOH A:311 , PRO G:106	BINDING SITE FOR RESIDUE PO4 A 165
03	AC3	SOFTWARE	GLY A:117 , MSE A:118 , HOH A:175 , SER C:91 , THR C:92	BINDING SITE FOR RESIDUE FMT A 166
04	AC4	SOFTWARE	HIS A:70 , LEU A:71 , HOH A:182 , HOH A:203	BINDING SITE FOR RESIDUE CL A 167
05	AC5	SOFTWARE	GLY B:10 , SER B:11 , ASP B:14 , ALA B:65 , GLY B:66 , PO4 B:165 , HOH B:272 , PRO D:106	BINDING SITE FOR RESIDUE PO4 B 164
06	AC6	SOFTWARE	SER B:38 , HIS B:40 , ARG B:41 , PO4 B:164 , HOH B:182 , PRO D:106 , HOH D:206	BINDING SITE FOR RESIDUE PO4 B 165
07	AC7	SOFTWARE	ASP B:48 , TYR B:49 , THR B:52 , ARG B:56	BINDING SITE FOR RESIDUE FMT B 166
08	AC8	SOFTWARE	GLY B:117 , MSE B:118	BINDING SITE FOR RESIDUE FMT B 167
09	AC9	SOFTWARE	GLY B:29 , ASP B:136	BINDING SITE FOR RESIDUE FMT B 168
10	BC1	SOFTWARE	GLY C:10 , SER C:38 , HIS C:40 , ARG C:41 , FMT C:166 , HOH C:185 , PRO H:106	BINDING SITE FOR RESIDUE PO4 C 164
11	BC2	SOFTWARE	GLY C:117 , MSE C:118	BINDING SITE FOR RESIDUE FMT C 165
12	BC3	SOFTWARE	GLY C:10 , ASP C:14 , GLY C:66 , PO4 C:164	BINDING SITE FOR RESIDUE FMT C 166
13	BC4	SOFTWARE	GLN C:96 , GLN D:96 , GLN E:96	BINDING SITE FOR RESIDUE F6R D 167
14	BC5	SOFTWARE	GLY D:10 , SER D:11 , ASP D:14 , ALA D:65 , GLY D:66 , FMT D:168 , HOH D:196	BINDING SITE FOR RESIDUE PO4 D 164
15	BC6	SOFTWARE	GLY D:117 , MSE D:118 , HOH D:182	BINDING SITE FOR RESIDUE FMT D 165
16	BC7	SOFTWARE	ASN D:94 , ASN E:94 , ASN G:94 , ASN H:94	BINDING SITE FOR RESIDUE FMT D 166
17	BC8	SOFTWARE	PRO B:106 , SER D:38 , HIS D:40 , ARG D:41 , PO4 D:164	BINDING SITE FOR RESIDUE FMT D 168
18	BC9	SOFTWARE	GLY E:10 , SER E:11 , ASP E:14 , ALA E:65 , GLY E:66 , FMT E:166 , HOH E:383	BINDING SITE FOR RESIDUE PO4 E 164
19	CC1	SOFTWARE	GLY E:117 , MSE E:118 , HOH E:470	BINDING SITE FOR RESIDUE FMT E 165
20	CC2	SOFTWARE	GLY E:10 , SER E:38 , HIS E:40 , ARG E:41 , PO4 E:164 , PRO F:106	BINDING SITE FOR RESIDUE FMT E 166
21	CC3	SOFTWARE	GLY F:10 , SER F:11 , ASP F:14 , ALA F:65 , GLY F:66 , FMT F:166 , HOH F:221	BINDING SITE FOR RESIDUE PO4 F 164
22	CC4	SOFTWARE	GLY F:117 , MSE F:118	BINDING SITE FOR RESIDUE FMT F 165
23	CC5	SOFTWARE	SER F:38 , HIS F:40 , PO4 F:164	BINDING SITE FOR RESIDUE FMT F 166
24	CC6	SOFTWARE	GLY G:10 , SER G:11 , ASP G:14 , GLY G:66 , FMT G:166 , HOH G:178	BINDING SITE FOR RESIDUE PO4 G 164
25	CC7	SOFTWARE	MSE G:118 , HOH G:182 , HOH G:184	BINDING SITE FOR RESIDUE FMT G 165
26	CC8	SOFTWARE	PRO A:106 , SER G:38 , HIS G:40 , PO4 G:164	BINDING SITE FOR RESIDUE FMT G 166
27	CC9	SOFTWARE	GLN F:96 , GLN G:96 , HOH G:211 , GLN H:96	BINDING SITE FOR RESIDUE F6R G 167
28	DC1	SOFTWARE	GLY H:10 , SER H:11 , ASP H:14 , ALA H:65 , GLY H:66 , PO4 H:165 , HOH H:262	BINDING SITE FOR RESIDUE PO4 H 164
29	DC2	SOFTWARE	PRO C:106 , HOH C:351 , GLY H:10 , SER H:38 , ALA H:39 , HIS H:40 , ARG H:41 , PO4 H:164 , HOH H:187	BINDING SITE FOR RESIDUE PO4 H 165
30	DC3	SOFTWARE	GLY H:117 , MSE H:118 , HOH H:184	BINDING SITE FOR RESIDUE FMT H 166

(no "SS Bond" information available for 3OPQ)

(no "Cis Peptide Bond" information available for 3OPQ)

(no "SAP(SNP)/Variant" information available for 3OPQ)

(no "PROSITE Motif" information available for 3OPQ)

(no "Exon" information available for 3OPQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q5NGE9_FRATT     2 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
               SCOP domains d3opqa_ A: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhh....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq A   2 SVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
                                   |11      | 21        31        41    |   51        61        71  |     81        91       101   |   111      |121       131       141       151       161
                                   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain B from PDB  Type:PROTEIN  Length:161
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
         Q5NGE9_FRATT     2 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPRE 162
               SCOP domains d3opqb_ B: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhhh...eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq B   2 SVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPRE 162
                                   |11      | 21        31        41    |   51        61        71  |     81        91       101   |   111      |121       131       141       151       161 
                                   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain C from PDB  Type:PROTEIN  Length:160
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q5NGE9_FRATT     2 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
               SCOP domains d3opqc_ C: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhh.....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq C   2 SVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
                                   |11      | 21        31        41    |   51        61        71  |     81        91       101   |   111      |121       131       141       151       161
                                   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:162
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161  
         Q5NGE9_FRATT     2 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPREH 163
               SCOP domains d3opqd_ D: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeeeeee...hhhhhhhh.....eeeeee......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3opq D   2 SVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPREH 163
                                   |11      | 21        31        41    |   51        61        71  |     81        91       101   |   111      |121       131       141       151       161  
                                   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain E from PDB  Type:PROTEIN  Length:159
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:159
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q5NGE9_FRATT     3 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
               SCOP domains d3opqe_ E: automated matches                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhh....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq E   3 VQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
                                  | 12     |  22        32        42   |    52        62        72 |      82        92       102  |    112     | 122       132       142       152         
                                  9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain F from PDB  Type:PROTEIN  Length:159
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:159
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152         
         Q5NGE9_FRATT     3 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
               SCOP domains d3opqf_ F: automated matches                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhh....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq F   3 VQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR 161
                                  | 12     |  22        32        42   |    52        62        72 |      82        92       102  |    112     | 122       132       142       152         
                                  9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain G from PDB  Type:PROTEIN  Length:160
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         Q5NGE9_FRATT     1 MSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDP 160
               SCOP domains d3opqg_ G: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq G   1 mSVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDP 160
                            |       10       |20        30        40     |  50        60        70   |    80        90       100    |  110       120       130       140       150       160
                            1-MSE   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Chain H from PDB  Type:PROTEIN  Length:161
 aligned with Q5NGE9_FRATT | Q5NGE9 from UniProtKB/TrEMBL  Length:163

    Alignment length:161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 
         Q5NGE9_FRATT     2 SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPRE 162
               SCOP domains d3opqh_ H: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -AIRC-3opqH01 H:3-154                                                                                                                                    -------- Pfam domains (1)
           Pfam domains (2) -AIRC-3opqH02 H:3-154                                                                                                                                    -------- Pfam domains (2)
           Pfam domains (3) -AIRC-3opqH03 H:3-154                                                                                                                                    -------- Pfam domains (3)
           Pfam domains (4) -AIRC-3opqH04 H:3-154                                                                                                                                    -------- Pfam domains (4)
           Pfam domains (5) -AIRC-3opqH05 H:3-154                                                                                                                                    -------- Pfam domains (5)
           Pfam domains (6) -AIRC-3opqH06 H:3-154                                                                                                                                    -------- Pfam domains (6)
           Pfam domains (7) -AIRC-3opqH07 H:3-154                                                                                                                                    -------- Pfam domains (7)
           Pfam domains (8) -AIRC-3opqH08 H:3-154                                                                                                                                    -------- Pfam domains (8)
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhhh...eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3opq H   2 SVQVGVImGSKSDWSTmKECCDILDNLGIGYECEVVSAHRTPDKmFDYAETAKERGLKVIIAGAGGAAHLPGmVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQmPAGIPVATFAIGmAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPRE 162
                                   |11      | 21        31        41    |   51        61        71  |     81        91       101   |   111      |121       131       141       151       161 
                                   9-MSE   18-MSE                      46-MSE                      74-MSE                        105-MSE      118-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) (32)

Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) (22)

Protein domain: automated matches (3)

Francisella tularensis [TaxId: 119856] (2)

1a	d3opqa_	A:
1b	d3opqc_	C:
1c	d3opqd_	D:
1d	d3opqe_	E:
1e	d3opqf_	F:
1f	d3opqg_	G:
1g	d3opqh_	H:
1h	d3opqb_	B:

(no "CATH Domain" information available for 3OPQ)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: AIRC] (12)

Family: AIRC (12)

Francisella tularensis subsp. tularensis (2)

1a	AIRC-3opqH01	H:3-154
1b	AIRC-3opqH02	H:3-154
1c	AIRC-3opqH03	H:3-154
1d	AIRC-3opqH04	H:3-154
1e	AIRC-3opqH05	H:3-154
1f	AIRC-3opqH06	H:3-154
1g	AIRC-3opqH07	H:3-154
1h	AIRC-3opqH08	H:3-154

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (Q5NGE9_FRATT | Q5NGE9)

molecular function
	GO:0034023	5-(carboxyamino)imidazole ribonucleotide mutase activity	Catalysis of the reaction: 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3opq)

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Access by PDB/NDB ID
	3opq
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q5NGE9_FRATT \| Q5NGE9
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	4.1.1.21
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	Q5NGE9_FRATT \| Q5NGE9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	Q5NGE9_FRATT \| Q5NGE9	:	3oow

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 79)

Sites (30, 30)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (0, 0)

Pfam Domains (1, 8)

Gene Ontology (5, 5)

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Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File