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3O83
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
STRUCTURE OF BASE N-TERMINAL DOMAIN FROM ACINETOBACTER BAUMANNII BOUND TO 2-(4-N-DODECYL-1,2,3-TRIAZOL-1-YL)-5'-O-[N-(2-HYDROXYBENZOYL) SULFAMOYL]ADENOSINE
Authors
:
E. J. Drake, B. P. Duckworth, J. Neres, C. C. Aldrich, A. M. Gulick
Date
:
02 Aug 10 (Deposition) - 06 Oct 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ligase, Adenylation Of 2, 3-Dihydroxybenzoate And Transfer To Pantetheine Cofactor Of Basf, Non-Ribosomal Peptide Synthetase (Nrps)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
E. J. Drake, B. P. Duckworth, J. Neres, C. C. Aldrich, A. M. Gulick
Biochemical And Structural Characterization Of Bisubstrate Inhibitors Of Base, The Self-Standing Nonribosomal Peptide Synthetase Adenylate-Forming Enzyme Of Acinetobactin Synthesis.
Biochemistry V. 49 9292 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL... (IXNa)
2b: 2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL... (IXNb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
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No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
IXN
2
Ligand/Ion
2-(4-DODECYL-1H-1,2,3-TRIAZOL-1-YL)-5'-O-{[(2-HYDROXYPHENYL)CARBONYL]SULFAMOYL}ADENOSINE
3
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:198 , HIS A:241 , ASN A:242 , PHE A:243 , SER A:247 , GLY A:314 , ALA A:315 , SER A:316 , VAL A:336 , PHE A:337 , GLY A:338 , MET A:339 , ALA A:340 , GLN A:360 , ASP A:420 , VAL A:432 , HOH A:671 , HOH A:753 , HOH A:754 , HOH A:769 , HOH A:770 , HOH A:771 , HOH A:790 , LYS B:437
BINDING SITE FOR RESIDUE IXN A 800
02
AC2
SOFTWARE
LYS A:437 , HIS B:241 , ASN B:242 , PHE B:243 , SER B:247 , GLY B:314 , ALA B:315 , SER B:316 , VAL B:336 , PHE B:337 , GLY B:338 , MET B:339 , ALA B:340 , ASP B:420 , VAL B:432 , HOH B:632 , HOH B:657 , HOH B:700 , HOH B:753 , HOH B:754
BINDING SITE FOR RESIDUE IXN B 800
03
AC3
SOFTWARE
GLU A:327 , ASN A:330 , HOH A:661 , HOH A:662 , HOH A:772 , GLN B:279
BINDING SITE FOR RESIDUE CA A 543
04
AC4
SOFTWARE
GLN A:53 , GLU A:58 , HOH A:663 , HOH A:664 , HOH A:665 , ASP B:171
BINDING SITE FOR RESIDUE CA A 544
05
AC5
SOFTWARE
GLN B:305 , LEU B:307 , ASN B:330 , HOH B:550 , HOH B:551 , HOH B:552 , HOH B:553
BINDING SITE FOR RESIDUE CA B 543
06
AC6
SOFTWARE
GLN A:305 , LEU A:307 , ASN A:330 , HOH A:659 , HOH A:660 , ASP B:302
BINDING SITE FOR RESIDUE CA A 545
07
AC7
SOFTWARE
GLN B:53 , GLU B:58 , HOH B:728 , HOH B:729 , HOH B:730 , HOH B:788
BINDING SITE FOR RESIDUE CA B 544
08
AC8
SOFTWARE
GLY B:74 , HOH B:694 , HOH B:695 , HOH B:696 , HOH B:767 , HOH B:771 , HOH B:789
BINDING SITE FOR RESIDUE CA B 545
09
AC9
SOFTWARE
GLY A:226 , LEU A:227 , THR A:231 , ASN A:281 , MET A:282 , HOH A:794
BINDING SITE FOR RESIDUE MPD A 546
10
BC1
SOFTWARE
THR B:231 , ASN B:281 , HOH B:776
BINDING SITE FOR RESIDUE MRD B 546
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3o83a_ (A:)
1b: SCOP_d3o83b_ (B:)
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Acinetobacter baumannii [TaxId: 557601]
(5)
1a
d3o83a_
A:
1b
d3o83b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (157 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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