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3NSS
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (545 KB)
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(1)
Title
:
THE 2009 PANDEMIC H1N1 NEURAMINIDASE N1 LACKS THE 150-CAVITY IN ITS ACTIVE SITES
Authors
:
Q. Li, J. X. Qi, W. Zhang, C. J. Vavricka, Y. Shi, G. F. Gao
Date
:
02 Jul 10 (Deposition) - 22 Sep 10 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Hydrolase, Calcium Binding, Glycosylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Li, J. X. Qi, W. Zhang, C. J. Vavricka, Y. Shi, J. H. Wei, E. G. Feng, J. S. Shen, J. L. Chen, D. Liu, J. H. He, J. H. Yan, H. Liu, H. L. Jiang, M. K. Teng, X. B. Li, G. F. Gao
The 2009 Pandemic H1N1 Neuraminidase N1 Lacks The 150-Cavit In Its Active Site
Nat. Struct. Mol. Biol. V. 17 1266 2010
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CA
5
Ligand/Ion
CALCIUM ION
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , NAG A:502 , HOH A:617 , HOH A:834 , HOH A:891
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
NAG A:501 , MAN A:503 , ASN B:329
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
NAG A:502 , MAN A:504 , HOH B:683
BINDING SITE FOR RESIDUE MAN A 503
04
AC4
SOFTWARE
MAN A:503 , ARG B:327 , ASP B:330 , ARG B:364 , LYS B:366 , GLU B:375
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
ALA A:86 , ASN A:88 , HOH A:718 , HOH A:745 , HOH A:768 , HOH A:843
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347 , HOH A:476
BINDING SITE FOR RESIDUE CA A 601
07
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , ASN A:389 , HOH A:493 , HOH A:565
BINDING SITE FOR RESIDUE CA A 602
08
AC8
SOFTWARE
HOH B:488 , HOH B:902 , HOH B:903 , HOH B:905
BINDING SITE FOR RESIDUE CA A 603
09
AC9
SOFTWARE
HOH A:53 , GLU A:276 , GLU A:277 , ARG A:292 , HOH A:888
BINDING SITE FOR RESIDUE ACT A 1
10
BC1
SOFTWARE
VAL A:94 , TRP A:361 , HOH A:798
BINDING SITE FOR RESIDUE ACT A 471
11
BC2
SOFTWARE
ASN A:272 , HOH A:875
BINDING SITE FOR RESIDUE ACT A 472
12
BC3
SOFTWARE
ASN B:146 , HOH B:872
BINDING SITE FOR RESIDUE NAG B 501
13
BC4
SOFTWARE
ASN B:88 , HOH B:565
BINDING SITE FOR RESIDUE NAG B 502
14
BC5
SOFTWARE
HOH B:3 , ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347
BINDING SITE FOR RESIDUE CA B 601
15
BC6
SOFTWARE
HOH B:56 , ASP B:379 , ASN B:381 , ASP B:387 , ASN B:389 , HOH B:575
BINDING SITE FOR RESIDUE CA B 602
16
BC7
SOFTWARE
VAL B:94 , TRP B:361
BINDING SITE FOR RESIDUE ACT B 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3nssa_ (A:)
1b: SCOP_d3nssb_ (B:)
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Protein Domains
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(
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 641501]
(5)
1a
d3nssa_
A:
1b
d3nssb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Neur_3nssB01 (B:82-466)
1b: PFAM_Neur_3nssB02 (B:82-466)
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Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza A virus (strain swl A/California/04/2009 H1N1)
(1)
1a
Neur-3nssB01
B:82-466
1b
Neur-3nssB02
B:82-466
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Asymmetric Unit 1
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Asym.Unit (282 KB)
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