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3NHQ
Biol. Unit 4
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (331 KB)
Biol.Unit 2 (336 KB)
Biol.Unit 3 (332 KB)
Biol.Unit 4 (335 KB)
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(1)
Title
:
THE DARK PFR STRUCTURE OF THE PHOTOSENSORY CORE MODULE OF P. AERUGINOSA BACTERIOPHYTOCHROME
Authors
:
X. Yang, Z. Ren, J. Kuk, K. Moffat
Date
:
14 Jun 10 (Deposition) - 30 Nov 11 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Photoreceptor, Phytochrome, Pas, Signaling, Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Yang, Z. Ren, J. Kuk, K. Moffat
Temperature-Scan Cryocrystallography Reveals Reaction Intermediates In Bacteriophytochrome.
Nature V. 479 428 2011
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
1c: BILIVERDINE IX ALPHA (BLAc)
1d: BILIVERDINE IX ALPHA (BLAd)
1e: BILIVERDINE IX ALPHA (BLAe)
1f: BILIVERDINE IX ALPHA (BLAf)
1g: BILIVERDINE IX ALPHA (BLAg)
1h: BILIVERDINE IX ALPHA (BLAh)
View:
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No.
Name
Count
Type
Full Name
1
BLA
2
Ligand/Ion
BILIVERDINE IX ALPHA
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
CYS G:12 , TYR G:163 , TYR G:185 , GLN G:188 , TYR G:190 , SER G:193 , ASP G:194 , PRO G:196 , TYR G:203 , ARG G:209 , HIS G:247 , TYR G:250 , SER G:275 , HIS G:277 , ARG G:453 , LEU G:454 , PRO G:456 , HOH G:901 , HOH G:905 , HOH G:924 , HOH G:925
BINDING SITE FOR RESIDUE BLA G 900
2
AC8
SOFTWARE
CYS H:12 , TYR H:163 , GLN H:188 , TYR H:190 , ASP H:194 , PRO H:196 , TYR H:203 , ARG H:209 , VAL H:243 , SER H:244 , HIS H:247 , TYR H:250 , SER H:275 , HIS H:277 , ARG H:453 , PRO H:456 , SER H:459 , HOH H:901
BINDING SITE FOR RESIDUE BLA H 900
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PHYTOCHROME_2 (G:139-297,H:139-297)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHYTOCHROME_2
PS50046
Phytochrome chromophore attachment site domain profile.
BPHY_PSEAE
139-297
2
-
-
-
-
-
-
G:139-297
H:139-297
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d3nhqa2 (A:118-309)
1b: SCOP_d3nhqb2 (B:118-309)
1c: SCOP_d3nhqc2 (C:118-309)
1d: SCOP_d3nhqd2 (D:118-309)
1e: SCOP_d3nhqe2 (E:118-309)
1f: SCOP_d3nhqf2 (F:118-309)
1g: SCOP_d3nhqg2 (G:118-309)
1h: SCOP_d3nhqh2 (H:118-309)
2a: SCOP_d3nhqa3 (A:310-494)
2b: SCOP_d3nhqb3 (B:310-497)
2c: SCOP_d3nhqc3 (C:310-496)
2d: SCOP_d3nhqd3 (D:310-496)
2e: SCOP_d3nhqe3 (E:310-495)
2f: SCOP_d3nhqf3 (F:310-498)
2g: SCOP_d3nhqg3 (G:310-497)
2h: SCOP_d3nhqh3 (H:310-496)
3a: SCOP_d3nhqa1 (A:5-117)
3b: SCOP_d3nhqb1 (B:5-117)
3c: SCOP_d3nhqc1 (C:5-117)
3d: SCOP_d3nhqd1 (D:5-117)
3e: SCOP_d3nhqe1 (E:5-117)
3f: SCOP_d3nhqf1 (F:5-117)
3g: SCOP_d3nhqg1 (G:5-117)
3h: SCOP_d3nhqh1 (H:5-117)
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Protein Domains
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(
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Organisms
(
)
(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
GAF domain-like
(54)
Family
:
GAF domain
(24)
Protein domain
:
Bacteriophytochrome BphP
(8)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d3nhqa2
A:118-309
1b
d3nhqb2
B:118-309
1c
d3nhqc2
C:118-309
1d
d3nhqd2
D:118-309
1e
d3nhqe2
E:118-309
1f
d3nhqf2
F:118-309
1g
d3nhqg2
G:118-309
1h
d3nhqh2
H:118-309
Family
:
Phytochrome-specific domain
(5)
Protein domain
:
Bacteriophytochrome BphP
(4)
Pseudomonas aeruginosa [TaxId: 287]
(4)
2a
d3nhqa3
A:310-494
2b
d3nhqb3
B:310-497
2c
d3nhqc3
C:310-496
2d
d3nhqd3
D:310-496
2e
d3nhqe3
E:310-495
2f
d3nhqf3
F:310-498
2g
d3nhqg3
G:310-497
2h
d3nhqh3
H:310-496
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
BphP N-terminal domain-like
(12)
Protein domain
:
Bacteriophytochrome BphP
(10)
Pseudomonas aeruginosa [TaxId: 287]
(7)
3a
d3nhqa1
A:5-117
3b
d3nhqb1
B:5-117
3c
d3nhqc1
C:5-117
3d
d3nhqd1
D:5-117
3e
d3nhqe1
E:5-117
3f
d3nhqf1
F:5-117
3g
d3nhqg1
G:5-117
3h
d3nhqh1
H:5-117
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (331 KB)
Header - Biol.Unit 1
Biol.Unit 2 (336 KB)
Header - Biol.Unit 2
Biol.Unit 3 (332 KB)
Header - Biol.Unit 3
Biol.Unit 4 (335 KB)
Header - Biol.Unit 4
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