PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3N6X
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (159 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONYLSPERMIDINE SYNTHASE (MFLA_0391) FROM METHYLOBACILLUS FLAGELLATUS KT AT 2.35 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
26 May 10 (Deposition) - 09 Jun 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Domain Of Unknown Function (Duf404), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Glutathionylspermidine Synthase (Mfla_0391) From Methylobacillus Flagellatus Kt At 2. 35 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(4, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
GOL
18
Ligand/Ion
GLYCEROL
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:162 , LEU A:163 , ARG A:164 , THR A:165 , PRO A:166 , ASP A:318 , GOL A:491 , HOH A:617
BINDING SITE FOR RESIDUE SO4 A 474
02
AC2
SOFTWARE
SER A:299 , ARG A:302 , ASN A:303 , HOH A:610
BINDING SITE FOR RESIDUE SO4 A 475
03
AC3
SOFTWARE
ARG A:302 , ASN A:303 , GOL A:487
BINDING SITE FOR RESIDUE SO4 A 476
04
AC4
SOFTWARE
THR A:165 , HIS A:234 , ARG A:275
BINDING SITE FOR RESIDUE CL A 477
05
AC5
SOFTWARE
ARG A:331
BINDING SITE FOR RESIDUE CL A 478
06
AC6
SOFTWARE
VAL A:438
BINDING SITE FOR RESIDUE CL A 479
07
AC7
SOFTWARE
ALA A:226 , ASN A:228 , TYR A:231 , PHE A:232
BINDING SITE FOR RESIDUE GOL A 480
08
AC8
SOFTWARE
GLY A:53 , ASN A:228 , ILE A:276 , ASP A:277 , HOH A:507
BINDING SITE FOR RESIDUE GOL A 481
09
AC9
SOFTWARE
GLU A:264 , ILE A:324 , ASN A:342 , VAL A:343 , HOH A:544 , HOH A:703
BINDING SITE FOR RESIDUE GOL A 482
10
BC1
SOFTWARE
ARG A:176 , MSE A:180 , VAL A:192 , PRO A:194 , HOH A:525 , HOH A:557
BINDING SITE FOR RESIDUE GOL A 483
11
BC2
SOFTWARE
MSE A:99 , GLY A:435 , VAL A:438 , HOH A:509 , HOH A:536
BINDING SITE FOR RESIDUE GOL A 484
12
BC3
SOFTWARE
PRO A:21 , ILE A:22 , ALA A:24 , GLU A:25 , TYR A:190
BINDING SITE FOR RESIDUE GOL A 485
13
BC4
SOFTWARE
ARG A:85 , ASN A:154 , ASP A:155 , PHE A:156 , ILE A:339 , SER A:341 , HOH A:707
BINDING SITE FOR RESIDUE GOL A 486
14
BC5
SOFTWARE
GLY A:132 , VAL A:133 , ASP A:134 , ARG A:302 , SO4 A:476 , HOH A:534
BINDING SITE FOR RESIDUE GOL A 487
15
BC6
SOFTWARE
TRP A:83 , SER A:87 , SER A:439 , LEU A:440 , PRO A:442 , HOH A:643 , HOH A:659
BINDING SITE FOR RESIDUE GOL A 488
16
BC7
SOFTWARE
THR A:263 , TYR A:346 , ASP A:353 , HOH A:709
BINDING SITE FOR RESIDUE GOL A 489
17
BC8
SOFTWARE
ILE A:69 , TYR A:171 , ARG A:447 , HOH A:602
BINDING SITE FOR RESIDUE GOL A 490
18
BC9
SOFTWARE
GLU A:160 , ASP A:161 , ARG A:164 , ASP A:318 , SO4 A:474 , HOH A:586
BINDING SITE FOR RESIDUE GOL A 491
19
CC1
SOFTWARE
ASN A:255 , ARG A:331 , GLU A:336 , GLU A:337
BINDING SITE FOR RESIDUE GOL A 492
20
CC2
SOFTWARE
ASP A:103 , HIS A:106 , ASP A:107 , HOH A:547
BINDING SITE FOR RESIDUE GOL A 493
21
CC3
SOFTWARE
HIS A:197 , VAL A:201 , LEU A:396 , SER A:439 , LEU A:440 , PRO A:442 , HOH A:640 , HOH A:700
BINDING SITE FOR RESIDUE GOL A 494
22
CC4
SOFTWARE
ARG A:207 , VAL A:214 , HIS A:215 , GLU A:389 , HOH A:666
BINDING SITE FOR RESIDUE GOL A 495
23
CC5
SOFTWARE
GLN A:125 , ARG A:164 , ASP A:277 , HOH A:648
BINDING SITE FOR RESIDUE GOL A 496
24
CC6
SOFTWARE
ALA A:124 , GLN A:125 , ARG A:127 , ARG A:188 , ASP A:279
BINDING SITE FOR RESIDUE GOL A 497
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CP_ATPgrasp_1_3n6xA01 (A:75-405)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
CP_ATPgrasp_1
(1)
Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)
(1)
1a
CP_ATPgrasp_1-3n6xA01
A:75-405
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (159 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3N6X
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
