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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONYLSPERMIDINE SYNTHASE (MFLA_0391) FROM METHYLOBACILLUS FLAGELLATUS KT AT 2.35 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  26 May 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Domain Of Unknown Function (Duf404), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Glutathionylspermidine Synthase (Mfla_0391) From Methylobacillus Flagellatus Kt At 2. 35 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE GLUTATHIONYLSPERMIDINE SYNTHASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDENATS
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MFLA_0391
    Organism Scientific: METHYLOBACILLUS FLAGELLATUS
    Organism Taxid: 265072
    Strain: KT / ATCC 51484 / DSM 6875

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric Unit (4, 36)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL18Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 33)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL18Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 66)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL36Ligand/IonGLYCEROL
3MSE24Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:162 , LEU A:163 , ARG A:164 , THR A:165 , PRO A:166 , ASP A:318 , GOL A:491 , HOH A:617BINDING SITE FOR RESIDUE SO4 A 474
02AC2SOFTWARESER A:299 , ARG A:302 , ASN A:303 , HOH A:610BINDING SITE FOR RESIDUE SO4 A 475
03AC3SOFTWAREARG A:302 , ASN A:303 , GOL A:487BINDING SITE FOR RESIDUE SO4 A 476
04AC4SOFTWARETHR A:165 , HIS A:234 , ARG A:275BINDING SITE FOR RESIDUE CL A 477
05AC5SOFTWAREARG A:331BINDING SITE FOR RESIDUE CL A 478
06AC6SOFTWAREVAL A:438BINDING SITE FOR RESIDUE CL A 479
07AC7SOFTWAREALA A:226 , ASN A:228 , TYR A:231 , PHE A:232BINDING SITE FOR RESIDUE GOL A 480
08AC8SOFTWAREGLY A:53 , ASN A:228 , ILE A:276 , ASP A:277 , HOH A:507BINDING SITE FOR RESIDUE GOL A 481
09AC9SOFTWAREGLU A:264 , ILE A:324 , ASN A:342 , VAL A:343 , HOH A:544 , HOH A:703BINDING SITE FOR RESIDUE GOL A 482
10BC1SOFTWAREARG A:176 , MSE A:180 , VAL A:192 , PRO A:194 , HOH A:525 , HOH A:557BINDING SITE FOR RESIDUE GOL A 483
11BC2SOFTWAREMSE A:99 , GLY A:435 , VAL A:438 , HOH A:509 , HOH A:536BINDING SITE FOR RESIDUE GOL A 484
12BC3SOFTWAREPRO A:21 , ILE A:22 , ALA A:24 , GLU A:25 , TYR A:190BINDING SITE FOR RESIDUE GOL A 485
13BC4SOFTWAREARG A:85 , ASN A:154 , ASP A:155 , PHE A:156 , ILE A:339 , SER A:341 , HOH A:707BINDING SITE FOR RESIDUE GOL A 486
14BC5SOFTWAREGLY A:132 , VAL A:133 , ASP A:134 , ARG A:302 , SO4 A:476 , HOH A:534BINDING SITE FOR RESIDUE GOL A 487
15BC6SOFTWARETRP A:83 , SER A:87 , SER A:439 , LEU A:440 , PRO A:442 , HOH A:643 , HOH A:659BINDING SITE FOR RESIDUE GOL A 488
16BC7SOFTWARETHR A:263 , TYR A:346 , ASP A:353 , HOH A:709BINDING SITE FOR RESIDUE GOL A 489
17BC8SOFTWAREILE A:69 , TYR A:171 , ARG A:447 , HOH A:602BINDING SITE FOR RESIDUE GOL A 490
18BC9SOFTWAREGLU A:160 , ASP A:161 , ARG A:164 , ASP A:318 , SO4 A:474 , HOH A:586BINDING SITE FOR RESIDUE GOL A 491
19CC1SOFTWAREASN A:255 , ARG A:331 , GLU A:336 , GLU A:337BINDING SITE FOR RESIDUE GOL A 492
20CC2SOFTWAREASP A:103 , HIS A:106 , ASP A:107 , HOH A:547BINDING SITE FOR RESIDUE GOL A 493
21CC3SOFTWAREHIS A:197 , VAL A:201 , LEU A:396 , SER A:439 , LEU A:440 , PRO A:442 , HOH A:640 , HOH A:700BINDING SITE FOR RESIDUE GOL A 494
22CC4SOFTWAREARG A:207 , VAL A:214 , HIS A:215 , GLU A:389 , HOH A:666BINDING SITE FOR RESIDUE GOL A 495
23CC5SOFTWAREGLN A:125 , ARG A:164 , ASP A:277 , HOH A:648BINDING SITE FOR RESIDUE GOL A 496
24CC6SOFTWAREALA A:124 , GLN A:125 , ARG A:127 , ARG A:188 , ASP A:279BINDING SITE FOR RESIDUE GOL A 497

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N6X)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:309 -Asn A:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N6X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N6X)

(-) Exons   (0, 0)

(no "Exon" information available for 3N6X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:451
 aligned with Q1H4C5_METFK | Q1H4C5 from UniProtKB/TrEMBL  Length:473

    Alignment length:467
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       
         Q1H4C5_METFK     6 TKPFDEMFLQDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITFNVYGEDAGAERLIPFDVVPRILSASEWARLSDGAIQRVKALNMFLHDVYHDQEIIKAGIVPSSILANAQYRPEMFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYMLENRKMMMRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQMGIELVEGQDLFVRNNAVYMRTTEGPKRVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK 472
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------           -------CP_ATPgrasp_1-3n6xA01 A:75-405                                                                                                                                                                                                                                                                                                             ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh......hhhhhhhhhhhhhh...-----------........eeehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhh...hhhhh...hhhhh...eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.........eeee.......hhhhhhhhhhhhh.eeehhh.eee....eee......eee.eeee..hhhhh..............hhhhhhhh...eee....hhhhhh..hhhhhhhhhhhhhh.....ee...ee..hhhhhhhhhhh...eeeee..-----.eee.hhhhhhhhhhhhhhhhhh...eeeee.....eeeeee..eeeeeeeeee.eeee...eee....eeeee.............eeee.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n6x A   6 TKPFDEmFLQDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-----------LIPFDVVPRILSASEWARLSDGAIQRVKALNmFLHDVYHDQEIIKAGIVPSSILANAQYRPEmFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYmLENRKmmmRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQmGIELVEGQDLFVRNNAVYmRTTEGPKRVDVIYRRIDDDFIDPLSFRPDSmLGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPEmIRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQ-----GmLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK 472
                                  | 15        25        35        45        55|        -  |     75        85        95   |   105       115       125    |  135       145       155       165      |175  |||  185       195       205       215       225       235     | 245       255    |  265       275       285     | 295       305       315       325   |   335       345       355       365    |    -||     385       395       405       415       425       435       445       455       465       
                                 12-MSE                                      56          68                             99-MSE                        130-MSE                                   172-MSE |||                                                          241-MSE            260-MSE                        291-MSE                               329-MSE                                  370   376|                                                                                               
                                                                                                                                                                                                      178-MSE                                                                                                                                                                                                377-MSE                                                                                           
                                                                                                                                                                                                       179-MSE                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                        180-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3N6X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N6X)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: ATP-grasp (83)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3N6X)

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