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3MUS
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (18 KB)
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(1)
Title
:
2A RESOLUTION STRUCTURE OF RAT TYPE B CYTOCHROME B5
Authors
:
S. Terzyan, X. Zhang, D. R. Benson
Date
:
03 May 10 (Deposition) - 13 Apr 11 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytochrome B5, Heme, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Parthasarathy, A. Altuve, S. Terzyan, X. Zhang, K. Kuczera, M. Rivera, D. R. Benson
Accommodating A Non-Conservative Internal Mutation By Water-Mediated Hydrogen-Bonding Between Beta-Sheet Strands: A Comparison Of Human And Rat Type B (Mitochondrial) Cytochrome B5
Biochemistry V. 50 5544 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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Label:
No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:32 , PHE A:35 , HIS A:39 , PRO A:40 , GLY A:41 , LEU A:46 , SER A:57 , VAL A:61 , HIS A:63 , SER A:64 , ALA A:67 , LEU A:71 , HOH A:128 , SER B:64 , PRO B:65 , ARG B:68
BINDING SITE FOR RESIDUE HEM A 201
2
AC2
SOFTWARE
ILE B:32 , ARG B:34 , PHE B:35 , HIS B:39 , PRO B:40 , VAL B:45 , LEU B:46 , VAL B:61 , HIS B:63 , SER B:64 , ALA B:67 , LEU B:71 , HOH B:88 , HOH B:162 , HOH B:169
BINDING SITE FOR RESIDUE HEM B 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_B5_2 (A:4-80,B:4-80)
2: CYTOCHROME_B5_1 (A:35-42,B:35-42)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_B5_2
PS50255
Cytochrome b5 family, heme-binding domain profile.
CYB5B_RAT
20-96
2
A:4-80
B:4-80
2
CYTOCHROME_B5_1
PS00191
Cytochrome b5 family, heme-binding domain signature.
CYB5B_RAT
51-58
2
A:35-42
B:35-42
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:2-38 | B:1-38)
Exon 1.2 (A:39-81 | B:39-81)
Exon 1.3 (A:82-86 | B:82-87)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015006
1
ENSRNOE00000104782
chr19:
37016959-37017126
168
CYB5B_RAT
1-54
54
2
A:2-38
B:1-38
37
38
1.2
ENSRNOT00000015006
2
ENSRNOE00000105131
chr19:
37036324-37036452
129
CYB5B_RAT
55-97
43
2
A:39-81
B:39-81
43
43
1.3
ENSRNOT00000015006
3
ENSRNOE00000105523
chr19:
37036904-37036933
30
CYB5B_RAT
98-107
10
2
A:82-86
B:82-87
5
6
1.4
ENSRNOT00000015006
4
ENSRNOE00000105590
chr19:
37045457-37045485
29
CYB5B_RAT
108-117
10
0
-
-
1.5
ENSRNOT00000015006
5
ENSRNOE00000295386
chr19:
37048353-37050718
2366
CYB5B_RAT
117-146
30
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3musa_ (A:)
1b: SCOP_d3musb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cytochrome b5-like heme/steroid binding domain
(64)
Superfamily
:
Cytochrome b5-like heme/steroid binding domain
(64)
Family
:
Cytochrome b5
(57)
Protein domain
:
automated matches
(10)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d3musa_
A:
1b
d3musb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cyt_b5_3musB01 (B:6-80)
1b: PFAM_Cyt_b5_3musB02 (B:6-80)
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Clans
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(
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)
(
)
Clan
:
no clan defined [family: Cyt-b5]
(29)
Family
:
Cyt-b5
(29)
Rattus norvegicus (Rat)
(4)
1a
Cyt-b5-3musB01
B:6-80
1b
Cyt-b5-3musB02
B:6-80
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