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Getting 'Exon' information from database.
3MUD
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
STRUCTURE OF THE TROPOMYOSIN OVERLAP COMPLEX FROM CHICKEN SMOOTH MUSCLE
Authors
:
V. A. Klenchin, J. Frye, I. Rayment
Date
:
02 May 10 (Deposition) - 23 Jun 10 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tropomysoin, Overlap Complex, Coiled-Coils, Contractile Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Frye, V. A. Klenchin, I. Rayment
Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle: Insight Into The Diversity Of N-Terminal Recognition .
Biochemistry V. 49 4908 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:98 , SER A:105 , ASN D:17
BINDING SITE FOR RESIDUE EDO D 258
2
AC2
SOFTWARE
HIS B:271 , LEU B:274 , GLY D:-2 , ALA D:-1 , SER D:0 , MET D:1 , HOH D:393
BINDING SITE FOR RESIDUE SO4 D 259
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022310 (S12C, chain A/B, )
2: VAR_022311 (A56T, chain A/B, )
3: VAR_022312 (T134T, chain A/B, )
4: VAR_022313 (E250Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022310
S
12
C
XRCC4_HUMAN
Polymorphism
28383138
A/B
S
12
C
2
UniProt
VAR_022311
A
56
T
XRCC4_HUMAN
Polymorphism
28383151
A/B
A
56
T
3
UniProt
VAR_022312
I
134
T
XRCC4_HUMAN
Polymorphism
28360135
A/B
T
134
T
4
UniProt
VAR_022313
E
142
Q
XRCC4_HUMAN
Polymorphism
28360136
A/B
E
250
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: EB1_C (C:215-223,D:215-230)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EB1_C
PS51230
EB1-C terminal (EB1-C) domain profile.
MARE1_HUMAN
185-255
2
C:215-223
D:215-230
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Exons
(7, 14)
Info
All Exons
Exon 1.2b (A:0-47 | B:0-47)
Exon 1.3a (A:47-105 | B:47-105)
Exon 1.4 (A:106-252 (gaps) | B:106-252 (gaps...)
Exon 1.5 (A:253-266 | B:253-266)
Exon 1.6 (A:267-269 | B:267-269)
Exon 1.7a (A:270-274 | B:270-283 (gaps))
Exon 1.8a (A:275-284 (gaps) | B:283-283)
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All Exon Boundaries
1: Boundary 1.1b/1.2b
2: Boundary 1.2b/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/1.8a
8: Boundary 1.8a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000338635
1b
ENSE00001556292
chr5:
82373346-82373434
89
XRCC4_HUMAN
-
0
0
-
-
1.2b
ENST00000338635
2b
ENSE00002174590
chr5:
82400729-82400877
149
XRCC4_HUMAN
1-47
47
2
A:0-47
B:0-47
47
47
1.3a
ENST00000338635
3a
ENSE00000971597
chr5:
82406847-82407022
176
XRCC4_HUMAN
47-105
59
2
A:47-105
B:47-105
59
59
1.4
ENST00000338635
4
ENSE00001005114
chr5:
82491589-82491755
167
XRCC4_HUMAN
106-161
56
2
A:106-252 (gaps)
B:106-252 (gaps)
39
39
1.5
ENST00000338635
5
ENSE00001005109
chr5:
82499371-82499526
156
XRCC4_HUMAN
161-213
53
2
A:253-266
B:253-266
14
14
1.6
ENST00000338635
6
ENSE00001005110
chr5:
82500634-82500740
107
XRCC4_HUMAN
213-249
37
2
A:267-269
B:267-269
3
3
1.7a
ENST00000338635
7a
ENSE00001005113
chr5:
82554349-82554496
148
XRCC4_HUMAN
249-298
50
2
A:270-274
B:270-283 (gaps)
5
23
1.8a
ENST00000338635
8a
ENSE00001932573
chr5:
82648944-82649530
587
XRCC4_HUMAN
298-336
39
2
A:275-284 (gaps)
B:283-283
18
1
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_XRCC4_3mudB01 (B:2-133)
1b: PFAM_XRCC4_3mudB02 (B:2-133)
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Clans
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)
Clan
:
no clan defined [family: XRCC4]
(1)
Family
:
XRCC4
(1)
Homo sapiens (Human)
(1)
1a
XRCC4-3mudB01
B:2-133
1b
XRCC4-3mudB02
B:2-133
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Asymmetric Unit 1
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