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3MS5
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (277 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GAMMA-BUTYROBETAINE,2-OXOGLUTARATE DIOXYGENASE 1 (BBOX1)
Authors
:
T. Krojer, G. Kochan, M. A. Mcdonough, F. Von Delft, I. K. H. Leung, L. He T. D. W. Claridge, E. Pilka, E. Ugochukwu, J. Muniz, P. Filippakopoulo C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, K. L. Kavanagh, C. J. Schofield, U. Oppermann, Structural Genomics Consortium (S
Date
:
29 Apr 10 (Deposition) - 12 May 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Gamma-Butyrobetaine Hydroxylase, Gamma-Butyrobetaine, 2-Oxoglutarate Dioxygenase 1, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: NICKEL (II) ION (NIa)
3a: N-OXALYLGLYCINE (OGAa)
4a: 2-(2-CARBOXYETHYL)-1,1,1-TRIMETHYL... (REEa)
5a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
NI
1
Ligand/Ion
NICKEL (II) ION
3
OGA
1
Ligand/Ion
N-OXALYLGLYCINE
4
REE
1
Ligand/Ion
2-(2-CARBOXYETHYL)-1,1,1-TRIMETHYLDIAZANIUM
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:202 , ASP A:204 , HIS A:347 , OGA A:390 , HOH A:800
BINDING SITE FOR RESIDUE NI A 388
02
AC2
SOFTWARE
CYS A:38 , CYS A:40 , CYS A:43 , HIS A:82
BINDING SITE FOR RESIDUE ZN A 389
03
AC3
SOFTWARE
VAL A:183 , ALA A:193 , LEU A:199 , HIS A:202 , ASP A:204 , HIS A:347 , ARG A:349 , ARG A:360 , LEU A:362 , NI A:388 , REE A:391 , EDO A:393 , EDO A:395 , HOH A:800
BINDING SITE FOR RESIDUE OGA A 390
04
AC4
SOFTWARE
TYR A:177 , TRP A:181 , ASN A:191 , TYR A:194 , ASP A:204 , TYR A:205 , ASN A:292 , TYR A:366 , OGA A:390 , EDO A:393 , HOH A:418 , HOH A:485
BINDING SITE FOR RESIDUE REE A 391
05
AC5
SOFTWARE
HIS A:209 , GLU A:279 , TRP A:343 , HOH A:744
BINDING SITE FOR RESIDUE EDO A 392
06
AC6
SOFTWARE
ASN A:191 , ALA A:193 , LEU A:199 , HIS A:202 , ASN A:292 , OGA A:390 , REE A:391 , HOH A:457
BINDING SITE FOR RESIDUE EDO A 393
07
AC7
SOFTWARE
LEU A:54 , LYS A:198 , LEU A:199 , SER A:200 , ASN A:292 , ASN A:293 , ALA A:294 , HOH A:486 , HOH A:597 , HOH A:637
BINDING SITE FOR RESIDUE EDO A 394
08
AC8
SOFTWARE
LEU A:217 , SER A:229 , HIS A:347 , GLY A:348 , OGA A:390
BINDING SITE FOR RESIDUE EDO A 395
09
AC9
SOFTWARE
TYR A:173 , LEU A:174 , HOH A:556 , HOH A:590
BINDING SITE FOR RESIDUE EDO A 396
10
BC1
SOFTWARE
TYR A:44 , LYS A:49 , ALA A:50 , THR A:260 , ALA A:294 , ARG A:296 , THR A:298 , HOH A:421 , HOH A:528 , HOH A:799
BINDING SITE FOR RESIDUE EDO A 397
11
BC2
SOFTWARE
LYS A:145 , ASP A:341 , TRP A:369 , HOH A:517 , HOH A:733
BINDING SITE FOR RESIDUE EDO A 398
12
BC3
SOFTWARE
GLN A:239 , GLY A:284 , GLN A:285 , VAL A:286
BINDING SITE FOR RESIDUE EDO A 399
13
BC4
SOFTWARE
TRP A:33 , ARG A:94 , PHE A:96 , ARG A:101 , THR A:298 , ILE A:299 , PHE A:300 , HOH A:680
BINDING SITE FOR RESIDUE EDO A 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_TauD_3ms5A01 (A:108-366)
2a: PFAM_DUF971_3ms5A02 (A:7-67)
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Clans
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(
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Clan
:
Cupin
(179)
Family
:
TauD
(9)
Homo sapiens (Human)
(3)
1a
TauD-3ms5A01
A:108-366
Clan
:
no clan defined [family: DUF971]
(5)
Family
:
DUF971
(5)
Homo sapiens (Human)
(3)
2a
DUF971-3ms5A02
A:7-67
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Chain A
Asymmetric Unit 1
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