3MS5 - JenaLib

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:202 , ASP A:204 , HIS A:347 , OGA A:390 , HOH A:800	BINDING SITE FOR RESIDUE NI A 388
02	AC2	SOFTWARE	CYS A:38 , CYS A:40 , CYS A:43 , HIS A:82	BINDING SITE FOR RESIDUE ZN A 389
03	AC3	SOFTWARE	VAL A:183 , ALA A:193 , LEU A:199 , HIS A:202 , ASP A:204 , HIS A:347 , ARG A:349 , ARG A:360 , LEU A:362 , NI A:388 , REE A:391 , EDO A:393 , EDO A:395 , HOH A:800	BINDING SITE FOR RESIDUE OGA A 390
04	AC4	SOFTWARE	TYR A:177 , TRP A:181 , ASN A:191 , TYR A:194 , ASP A:204 , TYR A:205 , ASN A:292 , TYR A:366 , OGA A:390 , EDO A:393 , HOH A:418 , HOH A:485	BINDING SITE FOR RESIDUE REE A 391
05	AC5	SOFTWARE	HIS A:209 , GLU A:279 , TRP A:343 , HOH A:744	BINDING SITE FOR RESIDUE EDO A 392
06	AC6	SOFTWARE	ASN A:191 , ALA A:193 , LEU A:199 , HIS A:202 , ASN A:292 , OGA A:390 , REE A:391 , HOH A:457	BINDING SITE FOR RESIDUE EDO A 393
07	AC7	SOFTWARE	LEU A:54 , LYS A:198 , LEU A:199 , SER A:200 , ASN A:292 , ASN A:293 , ALA A:294 , HOH A:486 , HOH A:597 , HOH A:637	BINDING SITE FOR RESIDUE EDO A 394
08	AC8	SOFTWARE	LEU A:217 , SER A:229 , HIS A:347 , GLY A:348 , OGA A:390	BINDING SITE FOR RESIDUE EDO A 395
09	AC9	SOFTWARE	TYR A:173 , LEU A:174 , HOH A:556 , HOH A:590	BINDING SITE FOR RESIDUE EDO A 396
10	BC1	SOFTWARE	TYR A:44 , LYS A:49 , ALA A:50 , THR A:260 , ALA A:294 , ARG A:296 , THR A:298 , HOH A:421 , HOH A:528 , HOH A:799	BINDING SITE FOR RESIDUE EDO A 397
11	BC2	SOFTWARE	LYS A:145 , ASP A:341 , TRP A:369 , HOH A:517 , HOH A:733	BINDING SITE FOR RESIDUE EDO A 398
12	BC3	SOFTWARE	GLN A:239 , GLY A:284 , GLN A:285 , VAL A:286	BINDING SITE FOR RESIDUE EDO A 399
13	BC4	SOFTWARE	TRP A:33 , ARG A:94 , PHE A:96 , ARG A:101 , THR A:298 , ILE A:299 , PHE A:300 , HOH A:680	BINDING SITE FOR RESIDUE EDO A 400

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:385
 aligned with BODG_HUMAN | O75936 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:385
                             1                                                                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379     
           BODG_HUMAN     - -MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQRVE 384
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------DUF971-3ms5A02 A:7-67                                        ----------------------------------------TauD-3ms5A01 A:108-366                                                                                                                                                                                                                                             ------------------ Pfam domains
         Sec.struct. author hhhh.eeeeeee....eeeeee....eeeeehhhhhhh......ee....ee..hhhhh.......eeee...eeeee.....eeeeehhhhhhh..hhhhhhhhhhhhhh.............eeehhhhhhhhhhhhhhhhhhhhhheeeee......hhhhhhhhhhh..........eee.......hhhhh...eeee...........eeeeeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhheeeeeeeee...eeeeeeeee.eee.....eeee.............hhhhhhhhhhhhhhhhhhhhh....eee......eeeee...eeeee...........eeeeeeehhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ms5 A   0 SMACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQRVE 384
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (2, 2)

Gene Ontology (13, 13)

Asymmetric Unit(hide GO term definitions)

Chain A (BODG_HUMAN | O75936)

molecular function
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0008336	gamma-butyrobetaine dioxygenase activity	Catalysis of the reaction: 2-oxoglutarate + 4-(trimethylammonio)butanoate + O(2) = carnitine + CO(2) + succinate.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0045329	carnitine biosynthetic process	The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	3ms5
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	1.14.11.1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

Sites (13, 13)