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3MPR
Asym. Unit
Info
Asym.Unit (417 KB)
Biol.Unit 1 (207 KB)
Biol.Unit 2 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN FROM BACTEROIDES THETAIOTAOMICRON, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BTR318A
Authors
:
A. Kuzin, M. Su, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt Northeast Structural Genomics Consortium (Nesg)
Date
:
27 Apr 10 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kuzin, M. Su, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D. Lee, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Northeast Structural Genomics Consortium Target Btr318A
To Be Published
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Hetero Components
(5, 46)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: BROMIDE ION (BRa)
2b: BROMIDE ION (BRb)
2c: BROMIDE ION (BRc)
2d: BROMIDE ION (BRd)
2e: BROMIDE ION (BRe)
2f: BROMIDE ION (BRf)
2g: BROMIDE ION (BRg)
2h: BROMIDE ION (BRh)
2i: BROMIDE ION (BRi)
2j: BROMIDE ION (BRj)
2k: BROMIDE ION (BRk)
2l: BROMIDE ION (BRl)
2m: BROMIDE ION (BRm)
2n: BROMIDE ION (BRn)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: UNKNOWN LIGAND (UNLa)
5b: UNKNOWN LIGAND (UNLb)
5c: UNKNOWN LIGAND (UNLc)
5d: UNKNOWN LIGAND (UNLd)
5e: UNKNOWN LIGAND (UNLe)
5f: UNKNOWN LIGAND (UNLf)
5g: UNKNOWN LIGAND (UNLg)
5h: UNKNOWN LIGAND (UNLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
BR
14
Ligand/Ion
BROMIDE ION
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
UNL
8
Ligand/Ion
UNKNOWN LIGAND
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:248 , ARG A:249 , HOH A:610 , LEU B:210 , HOH B:358 , HOH B:683
BINDING SITE FOR RESIDUE ACY A 1310
02
AC2
SOFTWARE
ASP A:108 , LYS A:161 , HOH A:419 , HOH A:430 , HOH A:1187 , ASP B:75
BINDING SITE FOR RESIDUE ACY A 1311
03
AC3
SOFTWARE
ARG A:151 , SER A:187
BINDING SITE FOR RESIDUE BR A 299
04
AC4
SOFTWARE
HIS A:296 , HOH A:458
BINDING SITE FOR RESIDUE BR A 300
05
AC5
SOFTWARE
LEU A:54 , HIS A:55
BINDING SITE FOR RESIDUE BR A 301
06
AC6
SOFTWARE
ASP A:131
BINDING SITE FOR RESIDUE BR A 302
07
AC7
SOFTWARE
ARG B:249
BINDING SITE FOR RESIDUE ACY B 1310
08
AC8
SOFTWARE
GLN B:40 , LEU B:64 , PRO B:65 , GLY B:66
BINDING SITE FOR RESIDUE BR B 299
09
AC9
SOFTWARE
ARG B:151 , SER B:187
BINDING SITE FOR RESIDUE BR B 300
10
BC1
SOFTWARE
HIS B:55
BINDING SITE FOR RESIDUE BR B 301
11
BC2
SOFTWARE
ARG C:249 , VAL C:251 , HOH C:1014
BINDING SITE FOR RESIDUE ACY C 1310
12
BC3
SOFTWARE
LYS C:148 , ARG C:151 , SER C:187
BINDING SITE FOR RESIDUE BR C 299
13
BC4
SOFTWARE
ARG C:74 , ILE C:121
BINDING SITE FOR RESIDUE BR C 300
14
BC5
SOFTWARE
ASP C:199 , LYS C:203 , HOH C:390 , HOH C:434
BINDING SITE FOR RESIDUE BR C 301
15
BC6
SOFTWARE
PRO A:234 , SER A:235 , HIS A:237 , ASP A:290 , HIS A:294 , HIS A:296 , ASP C:205 , HIS C:237 , LYS C:239 , HOH C:334 , HOH C:374
BINDING SITE FOR RESIDUE PEG C 306
16
BC7
SOFTWARE
ARG D:249
BINDING SITE FOR RESIDUE ACY D 1310
17
BC8
SOFTWARE
ASP A:205 , HIS A:237 , LYS A:239 , SER C:235 , HIS C:237 , PHE C:289 , ASP C:290 , HIS C:293 , HIS C:294 , HIS C:296 , HOH C:725
BINDING SITE FOR RESIDUE PEG C 307
18
BC9
SOFTWARE
PHE D:214 , THR D:223 , HOH D:323
BINDING SITE FOR RESIDUE ACY D 1311
19
CC1
SOFTWARE
GLN D:40 , PRO D:65 , GLY D:66 , HOH D:685
BINDING SITE FOR RESIDUE BR D 299
20
CC2
SOFTWARE
HIS D:55
BINDING SITE FOR RESIDUE BR D 300
21
CC3
SOFTWARE
LYS D:148 , SER D:187
BINDING SITE FOR RESIDUE BR D 301
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Exo_endo_phos_3mprD01 (D:10-280)
1b: PFAM_Exo_endo_phos_3mprD02 (D:10-280)
1c: PFAM_Exo_endo_phos_3mprD03 (D:10-280)
1d: PFAM_Exo_endo_phos_3mprD04 (D:10-280)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Exo_endo_phos]
(21)
Family
:
Exo_endo_phos
(21)
Bacteroides thetaiotaomicron
(1)
1a
Exo_endo_phos-3mprD01
D:10-280
1b
Exo_endo_phos-3mprD02
D:10-280
1c
Exo_endo_phos-3mprD03
D:10-280
1d
Exo_endo_phos-3mprD04
D:10-280
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]
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Protein & NOT Site
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Show PDB file:
Asym.Unit (417 KB)
Header - Asym.Unit
Biol.Unit 1 (207 KB)
Header - Biol.Unit 1
Biol.Unit 2 (207 KB)
Header - Biol.Unit 2
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