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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3MNG
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
WILD TYPE HUMAN PRXV WITH DTT BOUND AS A COMPETITIVE INHIBITOR
Authors
:
A. Hall, P. A. Karplus
Date
:
21 Apr 10 (Deposition) - 04 Aug 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Peroxiredoxin, Peroxidase, Prxv, Substrate Analog, Dtt, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Hall, D. Parsonage, L. B. Poole, P. A. Karplus
Structural Evidence That Peroxiredoxin Catalytic Power Is Based On Transition-State Stabilization.
J. Mol. Biol. V. 402 194 2010
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
2a: (4S,5S)-1,2-DITHIANE-4,5-DIOL (D1Da)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
8
Ligand/Ion
BROMIDE ION
2
D1D
1
Ligand/Ion
(4S,5S)-1,2-DITHIANE-4,5-DIOL
3
GOL
2
Ligand/Ion
GLYCEROL
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:40 , THR A:44 , GLY A:46 , CYS A:47 , ALA A:64 , GLY A:66 , ARG A:127
BINDING SITE FOR RESIDUE D1D A 201
02
AC2
SOFTWARE
LYS A:63 , LYS A:93 , SER A:118
BINDING SITE FOR RESIDUE BR A 301
03
AC3
SOFTWARE
PRO A:155
BINDING SITE FOR RESIDUE BR A 302
04
AC4
SOFTWARE
GLN A:133 , LEU A:149
BINDING SITE FOR RESIDUE BR A 303
05
AC5
SOFTWARE
ALA A:90 , GLU A:91
BINDING SITE FOR RESIDUE BR A 304
06
AC6
SOFTWARE
GLN A:68 , ASP A:113 , SER A:115
BINDING SITE FOR RESIDUE BR A 305
07
AC7
SOFTWARE
HIS A:88
BINDING SITE FOR RESIDUE BR A 306
08
AC8
SOFTWARE
VAL A:5
BINDING SITE FOR RESIDUE BR A 307
09
AC9
SOFTWARE
HOH A:1053 , HOH A:1122
BINDING SITE FOR RESIDUE BR A 308
10
BC1
SOFTWARE
THR A:150 , CYS A:151 , HOH A:1154 , HOH A:1195
BINDING SITE FOR RESIDUE GOL A 401
11
BC2
SOFTWARE
HOH A:1142 , HOH A:1211 , HOH A:1241 , HOH A:1250 , HOH A:1256
BINDING SITE FOR RESIDUE GOL A 402
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036406 (F104L, chain A, )
2: VAR_PRDX5_HUMAN_CCDS8069_1_01 (F104L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036406
F
157
L
PRDX5_HUMAN
Unclassified
---
A
F
104
L
2
CancerSNP
VAR_PRDX5_HUMAN_CCDS8069_1_01
*
F
157
L
PRDX5_HUMAN
Disease (Breast cancer)
---
A
F
104
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:3-161)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX5_HUMAN
56-214
1
A:3-161
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:1-4)
Exon 1.2 (A:5-49)
Exon 1.3 (A:50-93)
Exon 1.4 (A:94-106)
Exon 1.5 (A:107-127)
Exon 1.6 (A:127-161)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000265462
1
ENSE00001265861
chr11:
64085569-64085858
290
PRDX5_HUMAN
1-57
57
1
A:1-4
4
1.2
ENST00000265462
2
ENSE00001317366
chr11:
64087206-64087340
135
PRDX5_HUMAN
58-102
45
1
A:5-49
45
1.3
ENST00000265462
3
ENSE00001291509
chr11:
64088133-64088264
132
PRDX5_HUMAN
103-146
44
1
A:50-93
44
1.4
ENST00000265462
4
ENSE00001313724
chr11:
64088337-64088375
39
PRDX5_HUMAN
147-159
13
1
A:94-106
13
1.5
ENST00000265462
5
ENSE00000992394
chr11:
64088479-64088540
62
PRDX5_HUMAN
160-180
21
1
A:107-127
21
1.6
ENST00000265462
6
ENSE00001195244
chr11:
64089058-64089282
225
PRDX5_HUMAN
180-214
35
1
A:127-161
35
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3mnga_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3mnga_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Redoxin_3mngA01 (A:4-155)
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Clans
(
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(
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Families
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(
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Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
Redoxin
(27)
Homo sapiens (Human)
(6)
1a
Redoxin-3mngA01
A:4-155
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Asymmetric Unit 1
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