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3MK6
Asym. Unit
Info
Asym.Unit (241 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (118 KB)
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(1)
Title
:
SUBSTRATE AND INHIBITOR BINDING TO PANK
Authors
:
M. -K. Yun, S. W. White
Date
:
14 Apr 10 (Deposition) - 15 Sep 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Pank, Inhibitor, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Leonardi, Y. M. Zhang, M. K. Yun, R. Zhou, F. Y. Zeng, W. Lin, J. Cui, T. Chen, C. O. Rock, S. W. White, S. Jackowski
Modulation Of Pantothenate Kinase 3 Activity By Small Molecules That Interact With The Substrate/Allosteric Regulatory Domain.
Chem. Biol. V. 17 892 2010
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
1c: ACETYL COENZYME *A (ACOc)
1d: ACETYL COENZYME *A (ACOd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACO
4
Ligand/Ion
ACETYL COENZYME *A
2
GOL
8
Ligand/Ion
GLYCEROL
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:17 , LYS A:24 , GLY A:115 , GLY A:116 , LYS A:135 , GLU A:138 , GLY A:191 , SER A:192 , GLY A:193 , VAL A:194 , SER A:195 , ARG A:207 , THR A:211 , ARG A:325 , HOH A:394 , HOH A:400 , HOH A:429 , HOH A:451 , HOH A:468 , HOH A:478 , HOH A:491 , HOH A:497 , HOH A:498 , HOH A:525 , ILE C:253 , TYR C:254 , ALA C:267 , VAL C:268 , ALA C:269 , ASN C:299 , TYR C:336 , TYR C:340 , TRP C:341
BINDING SITE FOR RESIDUE ACO A 1901
02
AC2
SOFTWARE
GLY A:191 , GLY A:215 , LEU A:219 , ASN A:322 , PHE A:323 , HOH A:413 , HOH A:525
BINDING SITE FOR RESIDUE GOL A 369
03
AC3
SOFTWARE
TRP A:266 , TYR A:336 , ASP A:339 , TYR A:340 , HOH A:386 , HOH A:464
BINDING SITE FOR RESIDUE GOL A 370
04
AC4
SOFTWARE
LEU A:75 , PHE A:76 , LYS A:202 , HOH A:425
BINDING SITE FOR RESIDUE GOL A 371
05
AC5
SOFTWARE
ASP B:17 , GLY B:115 , GLY B:116 , LYS B:135 , GLU B:138 , GLY B:191 , SER B:192 , GLY B:193 , VAL B:194 , SER B:195 , ARG B:207 , THR B:211 , ASN B:322 , ARG B:325 , HOH B:399 , HOH B:403 , HOH B:430 , HOH B:433 , HOH B:441 , HOH B:442 , HOH B:455 , TYR D:254 , ALA D:267 , VAL D:268 , ALA D:269 , ASN D:299 , TYR D:340 , TRP D:341
BINDING SITE FOR RESIDUE ACO B 1902
06
AC6
SOFTWARE
GLY B:191 , GLY B:215 , LEU B:219 , ASN B:322 , PHE B:323 , HOH B:439 , HOH B:475
BINDING SITE FOR RESIDUE GOL B 369
07
AC7
SOFTWARE
ILE A:253 , TYR A:254 , ALA A:267 , VAL A:268 , ALA A:269 , ASN A:299 , TYR A:340 , TRP A:341 , ASP C:17 , GLY C:115 , GLY C:116 , LYS C:135 , GLU C:138 , GLY C:191 , SER C:192 , GLY C:193 , VAL C:194 , SER C:195 , ARG C:207 , THR C:211 , ARG C:325 , HOH C:383 , HOH C:400 , HOH C:402 , HOH C:455 , HOH C:469 , HOH C:520
BINDING SITE FOR RESIDUE ACO C 1903
08
AC8
SOFTWARE
GLY C:191 , GLY C:215 , LEU C:219 , ASN C:322 , PHE C:323 , HOH C:421
BINDING SITE FOR RESIDUE GOL C 369
09
AC9
SOFTWARE
ASN C:315 , GLN C:345 , LEU C:346 , LYS C:347 , HOH C:391 , HOH C:419
BINDING SITE FOR RESIDUE GOL C 370
10
BC1
SOFTWARE
ILE B:253 , TYR B:254 , ALA B:267 , VAL B:268 , ALA B:269 , ASN B:299 , TYR B:336 , TYR B:340 , TRP B:341 , ASP D:17 , LYS D:24 , GLY D:115 , GLY D:116 , LYS D:135 , GLU D:138 , GLY D:191 , SER D:192 , GLY D:193 , VAL D:194 , SER D:195 , ARG D:207 , THR D:211 , ARG D:325 , HOH D:385 , HOH D:393 , HOH D:394 , HOH D:407 , HOH D:415 , HOH D:420
BINDING SITE FOR RESIDUE ACO D 1904
11
BC2
SOFTWARE
GLY D:191 , GLY D:215 , LEU D:219 , ASN D:322 , PHE D:323 , HOH D:452
BINDING SITE FOR RESIDUE GOL D 369
12
BC3
SOFTWARE
ASN D:315 , GLN D:345 , LEU D:346 , LYS D:347 , HOH D:500
BINDING SITE FOR RESIDUE GOL D 370
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 27)
Info
All Exons
Exon 1.1a (A:6-11 | B:7-11 | C:6-11 | -)
Exon 1.3 (A:12-125 (gaps) | B:11-123 (gaps) ...)
Exon 1.4b (A:128-212 | B:128-212 (gaps) | C:1...)
Exon 1.5 (A:212-271 | B:212-271 | C:212-271 ...)
Exon 1.6 (A:271-312 | B:271-312 | C:271-312 ...)
Exon 1.7 (A:313-354 | B:313-354 | C:313-354 ...)
Exon 1.8b (A:355-368 | B:355-368 | C:355-367 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000239231
1a
ENSE00001370266
chr5:
168006605-168006261
345
PANK3_HUMAN
1-10
10
3
A:6-11
B:7-11
C:6-11
-
6
5
6
-
1.3
ENST00000239231
3
ENSE00000812752
chr5:
167996003-167995651
353
PANK3_HUMAN
10-127
118
4
A:12-125 (gaps)
B:11-123 (gaps)
C:12-125 (gaps)
D:11-127 (gaps)
114
114
114
117
1.4b
ENST00000239231
4b
ENSE00000812753
chr5:
167993271-167993018
254
PANK3_HUMAN
128-212
85
4
A:128-212
B:128-212 (gaps)
C:129-212
D:128-212
85
85
84
85
1.5
ENST00000239231
5
ENSE00000812754
chr5:
167991070-167990894
177
PANK3_HUMAN
212-271
60
4
A:212-271
B:212-271
C:212-271
D:212-271
60
60
60
60
1.6
ENST00000239231
6
ENSE00000812755
chr5:
167988521-167988398
124
PANK3_HUMAN
271-312
42
4
A:271-312
B:271-312
C:271-312
D:271-312
42
42
42
42
1.7
ENST00000239231
7
ENSE00000812756
chr5:
167986162-167986037
126
PANK3_HUMAN
313-354
42
4
A:313-354
B:313-354
C:313-354
D:313-354
42
42
42
42
1.8b
ENST00000239231
8b
ENSE00001249572
chr5:
167984626-167975500
9127
PANK3_HUMAN
355-370
16
4
A:355-368
B:355-368
C:355-367
D:355-365
14
14
13
11
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3mk6a1 (A:6-156)
1b: SCOP_d3mk6a2 (A:157-368)
1c: SCOP_d3mk6b1 (B:7-154)
1d: SCOP_d3mk6b2 (B:157-368)
1e: SCOP_d3mk6c1 (C:6-156)
1f: SCOP_d3mk6c2 (C:157-367)
1g: SCOP_d3mk6d1 (D:11-156)
1h: SCOP_d3mk6d2 (D:157-365)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Fumble-like
(7)
Protein domain
:
Pantothenate kinase 3, PANK3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3mk6a1
A:6-156
1b
d3mk6a2
A:157-368
1c
d3mk6b1
B:7-154
1d
d3mk6b2
B:157-368
1e
d3mk6c1
C:6-156
1f
d3mk6c2
C:157-367
1g
d3mk6d1
D:11-156
1h
d3mk6d2
D:157-365
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Fumble_3mk6D01 (D:12-365)
1b: PFAM_Fumble_3mk6D02 (D:12-365)
1c: PFAM_Fumble_3mk6D03 (D:12-365)
1d: PFAM_Fumble_3mk6D04 (D:12-365)
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Clan
:
Actin_ATPase
(173)
Family
:
Fumble
(1)
Homo sapiens (Human)
(1)
1a
Fumble-3mk6D01
D:12-365
1b
Fumble-3mk6D02
D:12-365
1c
Fumble-3mk6D03
D:12-365
1d
Fumble-3mk6D04
D:12-365
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