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3MA2
Biol. Unit 2
Info
Asym.Unit (103 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
COMPLEX MEMBRANE TYPE-1 MATRIX METALLOPROTEINASE (MT1-MMP) WITH TISSUE INHIBITOR OF METALLOPROTEINASE-1 (TIMP-1)
Authors
:
M. Grossman, D. Tworowski, O. Dym, M. -H. Lee, Y. Levy, I. Sagi
Date
:
23 Mar 10 (Deposition) - 30 Jun 10 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Protein - Protein Complex, Cleavage On Pair Of Basic Residues, Disulfide Bond, Membrane, Metal-Binding, Metalloprotease, Protease, Transmembrane, Zymogen, Erythrocyte Maturation, Glycoprotein, Metalloenzyme Inhibitor, Metalloprotease Inhibitor, Secreted, Hydrolase-Hydrolase Inhibitor Complex
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Reference
:
M. Grossman, D. Tworowski, O. Dym, M. H. Lee, Y. Levy, G. Murphy, I. Sagi
The Intrinsic Protein Flexibility Of Endogenous Protease Inhibitor Timp-1 Controls Its Binding Interface And Affects Its Function.
Biochemistry V. 49 6184 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
HOH A:64 , ASP A:176 , ASN A:208 , GLY A:210 , ASP A:212 , HOH A:312
BINDING SITE FOR RESIDUE CA A 293
2
AC6
SOFTWARE
HIS A:239 , HIS A:243 , HIS A:249 , CYS B:301
BINDING SITE FOR RESIDUE ZN A 294
3
AC7
SOFTWARE
HIS A:186 , ASP A:188 , HIS A:201 , HIS A:214
BINDING SITE FOR RESIDUE ZN A 295
4
AC8
SOFTWARE
ASP A:193 , GLY A:194 , GLY A:196 , PHE A:198 , ASP A:216 , GLU A:219
BINDING SITE FOR RESIDUE CA A 296
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_021032 (I233V, chain A, )
2: VAR_021033 (D273N, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021032
I
233
V
MMP14_HUMAN
Polymorphism
17884841
A
I
233
V
2
UniProt
VAR_021033
D
273
N
MMP14_HUMAN
Polymorphism
1042704
A
D
273
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NTR (B:301-424)
2: TIMP (B:301-313)
3: ZINC_PROTEASE (A:236-245)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTR
PS50189
NTR domain profile.
TIMP1_HUMAN
24-147
1
B:301-424
-
2
TIMP
PS00288
Tissue inhibitors of metalloproteinases signature.
TIMP1_HUMAN
24-36
1
B:301-313
-
3
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP14_HUMAN
236-245
1
A:236-245
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3ma2b_ (B:)
1b: SCOP_d3ma2c_ (C:)
2a: SCOP_d3ma2a_ (A:)
2b: SCOP_d3ma2d_ (D:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Tissue inhibitor of metalloproteinases, TIMP
(13)
Protein domain
:
TIMP-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3ma2b_
B:
1b
d3ma2c_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(32)
2a
d3ma2a_
A:
2b
d3ma2d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_3ma2D01 (D:118-284)
1b: PFAM_Peptidase_M10_3ma2D02 (D:118-284)
2a: PFAM_TIMP_3ma2C01 (C:301-424)
2b: PFAM_TIMP_3ma2C02 (C:301-424)
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Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-3ma2D01
D:118-284
1b
Peptidase_M10-3ma2D02
D:118-284
Clan
:
TIMP-like
(15)
Family
:
TIMP
(2)
Homo sapiens (Human)
(2)
2a
TIMP-3ma2C01
C:301-424
2b
TIMP-3ma2C02
C:301-424
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Asymmetric Unit 1
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Asym.Unit (103 KB)
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