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3M0E
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (294 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ATP-BOUND STATE OF WALKER B MUTANT OF NTRC1 ATPASE DOMAIN
Authors
:
B. Chen, T. A. Sysoeva, S. Chowdhury, M. Rusu, S. Birmanns, L. Guo, J. Han H. Yang, B. T. Nixon
Date
:
02 Mar 10 (Deposition) - 03 Nov 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.63
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Aaa+ Atpase Domain, Gaftga Loop, Arginine Finger, Sigma54 Activator, Bacterial Enhancer Binding Protein, Bacterial Transcription, Two- Component Signal Transduction, Atp-Binding, Dna-Binding, Nucleotide- Binding, Transcription, Transcription Regulation, Molecular Motor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Chen, T. A. Sysoeva, S. Chowdhury, L. Guo, S. De Carlo, J. A. Hanson, H. Yang, B. T. Nixon
Engagement Of Arginine Finger To Atp Triggers Large Conformational Changes In Ntrc1 Aaa+ Atpase For Remodeling Bacterial Rna Polymerase.
Structure V. 18 1420 2010
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
7
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
7
Ligand/Ion
MAGNESIUM ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:16 , HOH A:49 , HOH A:98 , TYR A:139 , VAL A:140 , SER A:169 , GLY A:170 , VAL A:171 , GLY A:172 , LYS A:173 , GLU A:174 , VAL A:175 , ASN A:280 , LEU A:320 , VAL A:356 , ARG A:357 , MG A:401 , ASP B:295 , ARG B:299
BINDING SITE FOR RESIDUE ATP A 400
02
AC2
SOFTWARE
HOH A:16 , GLU A:174 , ASP A:238 , ATP A:400 , HOH A:416
BINDING SITE FOR RESIDUE MG A 401
03
AC3
SOFTWARE
HOH B:14 , HOH B:114 , TYR B:139 , VAL B:140 , SER B:169 , GLY B:170 , VAL B:171 , GLY B:172 , LYS B:173 , GLU B:174 , VAL B:175 , ASN B:280 , VAL B:356 , ARG B:357 , MG B:401 , HOH B:427 , ASP C:295 , ARG C:299
BINDING SITE FOR RESIDUE ATP B 400
04
AC4
SOFTWARE
HOH B:14 , GLU B:174 , ATP B:400
BINDING SITE FOR RESIDUE MG B 401
05
AC5
SOFTWARE
HOH C:19 , HOH C:43 , TYR C:139 , VAL C:140 , SER C:169 , GLY C:170 , VAL C:171 , GLY C:172 , LYS C:173 , GLU C:174 , VAL C:175 , ASN C:280 , VAL C:356 , ARG C:357 , MG C:401 , ASP D:295 , ARG D:299
BINDING SITE FOR RESIDUE ATP C 400
06
AC6
SOFTWARE
HOH C:19 , GLU C:174 , ASP C:238 , ATP C:400
BINDING SITE FOR RESIDUE MG C 401
07
AC7
SOFTWARE
TYR D:139 , VAL D:140 , SER D:169 , GLY D:170 , VAL D:171 , GLY D:172 , LYS D:173 , GLU D:174 , VAL D:175 , ASN D:280 , LEU D:320 , VAL D:356 , ARG D:357 , MG D:401 , HOH D:410 , HOH E:8 , ASP E:295 , ARG E:299
BINDING SITE FOR RESIDUE ATP D 400
08
AC8
SOFTWARE
GLU D:174 , ASP D:238 , ATP D:400 , HOH E:8
BINDING SITE FOR RESIDUE MG D 401
09
AC9
SOFTWARE
HOH E:6 , HOH E:68 , TYR E:139 , VAL E:140 , SER E:169 , GLY E:170 , VAL E:171 , GLY E:172 , LYS E:173 , GLU E:174 , VAL E:175 , ASN E:280 , LEU E:320 , VAL E:356 , ARG E:357 , HOH E:395 , MG E:401 , ASP F:295 , ARG F:299
BINDING SITE FOR RESIDUE ATP E 400
10
BC1
SOFTWARE
HOH E:6 , GLU E:174 , ATP E:400 , HOH E:405 , ARG F:299
BINDING SITE FOR RESIDUE MG E 401
11
BC2
SOFTWARE
HOH F:18 , HOH F:40 , TYR F:139 , VAL F:140 , SER F:169 , GLY F:170 , VAL F:171 , GLY F:172 , LYS F:173 , GLU F:174 , VAL F:175 , ASN F:280 , VAL F:356 , ARG F:357 , MG F:401 , ASP G:295 , ARG G:299
BINDING SITE FOR RESIDUE ATP F 400
12
BC3
SOFTWARE
HOH F:18 , GLU F:174 , ASP F:238 , ATP F:400 , HOH F:419
BINDING SITE FOR RESIDUE MG F 401
13
BC4
SOFTWARE
ASP A:295 , ARG A:299 , HOH G:7 , HOH G:35 , TYR G:139 , VAL G:140 , SER G:169 , GLY G:170 , VAL G:171 , GLY G:172 , LYS G:173 , GLU G:174 , VAL G:175 , ASN G:280 , LEU G:320 , VAL G:356 , ARG G:357 , HOH G:388 , MG G:401
BINDING SITE FOR RESIDUE ATP G 400
14
BC5
SOFTWARE
HOH G:7 , GLU G:174 , ASP G:238 , ATP G:400 , HOH G:422
BINDING SITE FOR RESIDUE MG G 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 7)
Info
All SCOP Domains
1a: SCOP_d3m0ea_ (A:)
1b: SCOP_d3m0eb_ (B:)
1c: SCOP_d3m0ec_ (C:)
1d: SCOP_d3m0ed_ (D:)
1e: SCOP_d3m0ee_ (E:)
1f: SCOP_d3m0ef_ (F:)
1g: SCOP_d3m0eg_ (G:)
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Protein Domains
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(
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
automated matches
(8)
Aquifex aeolicus [TaxId: 63363]
(1)
1a
d3m0ea_
A:
1b
d3m0eb_
B:
1c
d3m0ec_
C:
1d
d3m0ed_
D:
1e
d3m0ee_
E:
1f
d3m0ef_
F:
1g
d3m0eg_
G:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 7)
Info
all PFAM domains
1a: PFAM_Sigma54_activat_3m0eG01 (G:139-306)
1b: PFAM_Sigma54_activat_3m0eG02 (G:139-306)
1c: PFAM_Sigma54_activat_3m0eG03 (G:139-306)
1d: PFAM_Sigma54_activat_3m0eG04 (G:139-306)
1e: PFAM_Sigma54_activat_3m0eG05 (G:139-306)
1f: PFAM_Sigma54_activat_3m0eG06 (G:139-306)
1g: PFAM_Sigma54_activat_3m0eG07 (G:139-306)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Sigma54_activat
(5)
Aquifex aeolicus
(3)
1a
Sigma54_activat-3m0eG01
G:139-306
1b
Sigma54_activat-3m0eG02
G:139-306
1c
Sigma54_activat-3m0eG03
G:139-306
1d
Sigma54_activat-3m0eG04
G:139-306
1e
Sigma54_activat-3m0eG05
G:139-306
1f
Sigma54_activat-3m0eG06
G:139-306
1g
Sigma54_activat-3m0eG07
G:139-306
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Asymmetric Unit 1
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