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3LY6
Biol. Unit 1
Info
Asym.Unit (310 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TRANSGLUTAMINASE 2 COMPLEX WITH ADENOSINE 5' TRIPHOSPHATE
Authors
:
B. G. Han, B. I. Lee
Date
:
26 Feb 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.14
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Transglutaminase, Acyltransferase, Diabetes Mellitus, Disease Mutation, Metal-Binding, Phosphoprotein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. G. Han, J. W. Cho, Y. D. Cho, K. C. Jeong, S. Y. Kim, B. I. Lee
Crystal Structure Of Human Transglutaminase 2 In Complex With Adenosine Triphosphate
Int. J. Biol. Macromol. V. 47 190 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:174 , ARG A:476 , ARG A:478 , VAL A:479 , GLY A:480 , GLN A:481 , SER A:482 , MET A:483 , ARG A:580 , LEU A:582 , TYR A:583
BINDING SITE FOR RESIDUE ATP A 700
[
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_052553 (R76H, chain A, )
2: VAR_055357 (R214H, chain A, )
3: VAR_055358 (Q324R, chain A, )
4: VAR_037998 (M330R, chain A, )
5: VAR_037999 (I331N, chain A, )
6: VAR_055359 (R436W, chain A, )
7: VAR_052554 (P536S, chain A, )
8: VAR_036554 (G660V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052553
R
76
H
TGM2_HUMAN
Polymorphism
41274720
A
R
76
H
2
UniProt
VAR_055357
R
214
H
TGM2_HUMAN
Polymorphism
45530133
A
R
214
H
3
UniProt
VAR_055358
Q
324
R
TGM2_HUMAN
Polymorphism
45567334
A
Q
324
R
4
UniProt
VAR_037998
M
330
R
TGM2_HUMAN
Unclassified
---
A
M
330
R
5
UniProt
VAR_037999
I
331
N
TGM2_HUMAN
Unclassified
---
A
I
331
N
6
UniProt
VAR_055359
R
436
W
TGM2_HUMAN
Polymorphism
45629036
A
R
436
W
7
UniProt
VAR_052554
P
536
S
TGM2_HUMAN
Polymorphism
45556333
A
P
536
S
8
UniProt
VAR_036554
G
660
V
TGM2_HUMAN
Unclassified
---
A
G
660
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRANSGLUTAMINASES (A:275-292)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSGLUTAMINASES
PS00547
Transglutaminases active site.
TGM2_HUMAN
275-292
1
A:275-292
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d3ly6a1 (A:4-145)
1b: SCOP_d3ly6b1 (B:4-145)
1c: SCOP_d3ly6c1 (C:4-145)
2a: SCOP_d3ly6a3 (A:469-585)
2b: SCOP_d3ly6a4 (A:586-688)
2c: SCOP_d3ly6b3 (B:469-585)
2d: SCOP_d3ly6b4 (B:586-688)
2e: SCOP_d3ly6c3 (C:469-585)
2f: SCOP_d3ly6c4 (C:586-688)
3a: SCOP_d3ly6a2 (A:146-468)
3b: SCOP_d3ly6b2 (B:146-468)
3c: SCOP_d3ly6c2 (C:146-468)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Transglutaminase N-terminal domain
(17)
Protein domain
:
Transglutaminase N-terminal domain
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
1a
d3ly6a1
A:4-145
1b
d3ly6b1
B:4-145
1c
d3ly6c1
C:4-145
Superfamily
:
Transglutaminase, two C-terminal domains
(18)
Family
:
Transglutaminase, two C-terminal domains
(17)
Protein domain
:
Transglutaminase, two C-terminal domains
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
2a
d3ly6a3
A:469-585
2b
d3ly6a4
A:586-688
2c
d3ly6b3
B:469-585
2d
d3ly6b4
B:586-688
2e
d3ly6c3
C:469-585
2f
d3ly6c4
C:586-688
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Transglutaminase core
(22)
Protein domain
:
Transglutaminase catalytic domain
(17)
Human (Homo sapiens), tissue isozyme [TaxId: 9606]
(3)
3a
d3ly6a2
A:146-468
3b
d3ly6b2
B:146-468
3c
d3ly6c2
C:146-468
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Transglut_C_3ly6C01 (C:587-686)
1b: PFAM_Transglut_C_3ly6C02 (C:587-686)
1c: PFAM_Transglut_C_3ly6C03 (C:587-686)
1d: PFAM_Transglut_C_3ly6C04 (C:587-686)
1e: PFAM_Transglut_C_3ly6C05 (C:587-686)
1f: PFAM_Transglut_C_3ly6C06 (C:587-686)
2a: PFAM_Transglut_core_3ly6C07 (C:256-359)
2b: PFAM_Transglut_core_3ly6C08 (C:256-359)
2c: PFAM_Transglut_core_3ly6C09 (C:256-359)
3a: PFAM_Transglut_N_3ly6C10 (C:5-124)
3b: PFAM_Transglut_N_3ly6C11 (C:5-124)
3c: PFAM_Transglut_N_3ly6C12 (C:5-124)
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Clans
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Organisms
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)
(
)
Clan
:
E-set
(290)
Family
:
Transglut_C
(8)
Homo sapiens (Human)
(8)
1a
Transglut_C-3ly6C01
C:587-686
1b
Transglut_C-3ly6C02
C:587-686
1c
Transglut_C-3ly6C03
C:587-686
1d
Transglut_C-3ly6C04
C:587-686
1e
Transglut_C-3ly6C05
C:587-686
1f
Transglut_C-3ly6C06
C:587-686
Clan
:
Peptidase_CA
(169)
Family
:
Transglut_core
(7)
Homo sapiens (Human)
(7)
2a
Transglut_core-3ly6C07
C:256-359
2b
Transglut_core-3ly6C08
C:256-359
2c
Transglut_core-3ly6C09
C:256-359
Clan
:
no clan defined [family: Transglut_N]
(7)
Family
:
Transglut_N
(7)
Homo sapiens (Human)
(7)
3a
Transglut_N-3ly6C10
C:5-124
3b
Transglut_N-3ly6C11
C:5-124
3c
Transglut_N-3ly6C12
C:5-124
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