3LY6 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN TRANSGLUTAMINASE 2 COMPLEX WITH ADENOSINE 5' TRIPHOSPHATE

Authors :   B. G. Han, B. I. Lee

Date :   26 Feb 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.14

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Transglutaminase, Acyltransferase, Diabetes Mellitus, Disease Mutation, Metal-Binding, Phosphoprotein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. G. Han, J. W. Cho, Y. D. Cho, K. C. Jeong, S. Y. Kim, B. I. Lee
Crystal Structure Of Human Transglutaminase 2 In Complex With Adenosine Triphosphate
Int. J. Biol. Macromol. V. 47 190 2010
PubMed-ID: 20450932 | Reference-DOI: 10.1016/J.IJBIOMAC.2010.04.023

Molecule 1 - PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE 2
	Chains	:	A, B, C
	EC Number	:	2.3.2.13
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32 (NOVAGEN)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TGM2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TGM2, TISSUE TRANSGLUTAMINASE, TGASE C, TGC, TG(C), TRANSGLUTAMINASE-2, TGASE-H

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	ATP	3	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:174 , ARG A:476 , ARG A:478 , VAL A:479 , GLY A:480 , GLN A:481 , SER A:482 , MET A:483 , ARG A:580 , LEU A:582 , TYR A:583	BINDING SITE FOR RESIDUE ATP A 700
2	AC2	SOFTWARE	PHE B:174 , ARG B:476 , ARG B:478 , VAL B:479 , GLY B:480 , GLN B:481 , SER B:482 , MET B:483 , ARG B:580 , LEU B:582 , TYR B:583 , ARG C:478 , ATP C:702	BINDING SITE FOR RESIDUE ATP B 701
3	AC3	SOFTWARE	ARG B:478 , ATP B:701 , PHE C:174 , ARG C:476 , ARG C:478 , VAL C:479 , GLY C:480 , GLN C:481 , SER C:482 , MET C:483 , ARG C:580 , LEU C:582 , TYR C:583	BINDING SITE FOR RESIDUE ATP C 702

Asymmetric Unit

No.	Residues
1	A:230	-	A:370
2	B:230	-	B:370
3	C:230	-	C:370

Asymmetric Unit

No.	Residues
1	Gly A:372	-	Pro A:373
2	Gly B:372	-	Pro B:373
3	Gly C:372	-	Pro C:373

Asymmetric Unit (8, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052553	R	76	H	TGM2_HUMAN	Polymorphism	41274720	A/B/C	R	76	H
2	UniProt	VAR_055357	R	214	H	TGM2_HUMAN	Polymorphism	45530133	A/B/C	R	214	H
3	UniProt	VAR_055358	Q	324	R	TGM2_HUMAN	Polymorphism	45567334	A/B/C	Q	324	R
4	UniProt	VAR_037998	M	330	R	TGM2_HUMAN	Unclassified	141603506	A/B/C	M	330	R
5	UniProt	VAR_037999	I	331	N	TGM2_HUMAN	Unclassified	---	A/B/C	I	331	N
6	UniProt	VAR_055359	R	436	W	TGM2_HUMAN	Polymorphism	45629036	A/B/C	R	436	W
7	UniProt	VAR_052554	P	536	S	TGM2_HUMAN	Polymorphism	45556333	A/B/C	P	536	S
8	UniProt	VAR_036554	G	660	V	TGM2_HUMAN	Unclassified	---	A/B/C	G	660	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052553	R	76	H	TGM2_HUMAN	Polymorphism	41274720	A	R	76	H
2	UniProt	VAR_055357	R	214	H	TGM2_HUMAN	Polymorphism	45530133	A	R	214	H
3	UniProt	VAR_055358	Q	324	R	TGM2_HUMAN	Polymorphism	45567334	A	Q	324	R
4	UniProt	VAR_037998	M	330	R	TGM2_HUMAN	Unclassified	141603506	A	M	330	R
5	UniProt	VAR_037999	I	331	N	TGM2_HUMAN	Unclassified	---	A	I	331	N
6	UniProt	VAR_055359	R	436	W	TGM2_HUMAN	Polymorphism	45629036	A	R	436	W
7	UniProt	VAR_052554	P	536	S	TGM2_HUMAN	Polymorphism	45556333	A	P	536	S
8	UniProt	VAR_036554	G	660	V	TGM2_HUMAN	Unclassified	---	A	G	660	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052553	R	76	H	TGM2_HUMAN	Polymorphism	41274720	B	R	76	H
2	UniProt	VAR_055357	R	214	H	TGM2_HUMAN	Polymorphism	45530133	B	R	214	H
3	UniProt	VAR_055358	Q	324	R	TGM2_HUMAN	Polymorphism	45567334	B	Q	324	R
4	UniProt	VAR_037998	M	330	R	TGM2_HUMAN	Unclassified	141603506	B	M	330	R
5	UniProt	VAR_037999	I	331	N	TGM2_HUMAN	Unclassified	---	B	I	331	N
6	UniProt	VAR_055359	R	436	W	TGM2_HUMAN	Polymorphism	45629036	B	R	436	W
7	UniProt	VAR_052554	P	536	S	TGM2_HUMAN	Polymorphism	45556333	B	P	536	S
8	UniProt	VAR_036554	G	660	V	TGM2_HUMAN	Unclassified	---	B	G	660	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052553	R	76	H	TGM2_HUMAN	Polymorphism	41274720	C	R	76	H
2	UniProt	VAR_055357	R	214	H	TGM2_HUMAN	Polymorphism	45530133	C	R	214	H
3	UniProt	VAR_055358	Q	324	R	TGM2_HUMAN	Polymorphism	45567334	C	Q	324	R
4	UniProt	VAR_037998	M	330	R	TGM2_HUMAN	Unclassified	141603506	C	M	330	R
5	UniProt	VAR_037999	I	331	N	TGM2_HUMAN	Unclassified	---	C	I	331	N
6	UniProt	VAR_055359	R	436	W	TGM2_HUMAN	Polymorphism	45629036	C	R	436	W
7	UniProt	VAR_052554	P	536	S	TGM2_HUMAN	Polymorphism	45556333	C	P	536	S
8	UniProt	VAR_036554	G	660	V	TGM2_HUMAN	Unclassified	---	C	G	660	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSGLUTAMINASES	PS00547	Transglutaminases active site.	TGM2_HUMAN	275-292	3	A:275-292 B:275-292 C:275-292

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSGLUTAMINASES	PS00547	Transglutaminases active site.	TGM2_HUMAN	275-292	1	A:275-292 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSGLUTAMINASES	PS00547	Transglutaminases active site.	TGM2_HUMAN	275-292	1	- B:275-292 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSGLUTAMINASES	PS00547	Transglutaminases active site.	TGM2_HUMAN	275-292	1	- - C:275-292

Asymmetric Unit (13, 39)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000361475	2a	ENSE00001922845	chr20:36793774-36793591	184	TGM2_HUMAN	1-4	4	3	A:4-4 B:4-4 C:4-4	1 1 1
1.3b	ENST00000361475	3b	ENSE00000800527	chr20:36790001-36789822	180	TGM2_HUMAN	4-64	61	3	A:4-64 B:4-64 C:4-64	61 61 61
1.4a	ENST00000361475	4a	ENSE00000661931	chr20:36784491-36784249	243	TGM2_HUMAN	64-145	82	3	A:64-145 (gaps) B:64-145 (gaps) C:64-145 (gaps)	82 82 82
1.5b	ENST00000361475	5b	ENSE00000661930	chr20:36779459-36779341	119	TGM2_HUMAN	145-184	40	3	A:145-184 B:145-184 C:145-184	40 40 40
1.6	ENST00000361475	6	ENSE00000800526	chr20:36776491-36776363	129	TGM2_HUMAN	185-227	43	3	A:185-227 B:185-227 C:185-227	43 43 43
1.7b	ENST00000361475	7b	ENSE00000800525	chr20:36775296-36775119	178	TGM2_HUMAN	228-287	60	3	A:228-287 B:228-287 C:228-287	60 60 60
1.8	ENST00000361475	8	ENSE00000661927	chr20:36770601-36770466	136	TGM2_HUMAN	287-332	46	3	A:287-332 B:287-332 C:287-332	46 46 46
1.9	ENST00000361475	9	ENSE00000661926	chr20:36769787-36769684	104	TGM2_HUMAN	332-367	36	3	A:332-367 B:332-367 C:332-367	36 36 36
1.10	ENST00000361475	10	ENSE00000661925	chr20:36768056-36767814	243	TGM2_HUMAN	367-448	82	3	A:367-448 B:367-448 C:367-448	82 82 82
1.11a	ENST00000361475	11a	ENSE00000661924	chr20:36766787-36766515	273	TGM2_HUMAN	448-539	92	3	A:448-539 B:448-539 C:448-539	92 92 92
1.12b	ENST00000361475	12b	ENSE00000661923	chr20:36760902-36760742	161	TGM2_HUMAN	539-592	54	3	A:539-592 B:539-592 C:539-592	54 54 54
1.13b	ENST00000361475	13b	ENSE00000661922	chr20:36759631-36759495	137	TGM2_HUMAN	593-638	46	3	A:593-638 B:593-638 C:593-638	46 46 46
1.14a	ENST00000361475	14a	ENSE00001904837	chr20:36758771-36756863	1909	TGM2_HUMAN	638-687	50	3	A:638-687 B:638-687 C:638-687	50 50 50

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:683
 aligned with TGM2_HUMAN | P21980 from UniProtKB/Swiss-Prot  Length:687

    Alignment length:685
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     687 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683   | 
           TGM2_HUMAN     4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA-   -
               SCOP domains d3ly6a1 A:4-145 Transglutaminase N-terminal domain                                                                                            d3ly6a2 A:146-468 Transglutaminase catalytic domain                                                                                                                                                                                                                                                                                d3ly6a3 A:469-585 Transglutaminase, two C-terminal domains                                                           d3ly6a4 A:586-688 Transglutaminase, two C-terminal domains                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhh.........eeee...eeeeeee...........eeeeeee...........eeeee.....--...eeee......eeeeeee.......eeeeeeeeee......eeeeeeeeee.............hhhhhhhhhh..eeeeeee....eeeeeee......hhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.......eee..........hhhhh.hhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhh..eeeeeeeee........eeeeee..............eeeeeeeeeee..........eeeeeeeeeee....eeeeeeeehhhhhhh......hhhhhhhhhhheeeeeee.....eee.........eeeeee......eee.hhhh.....hhhhhhhhhhh.............eeeeee..........eeeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeehhhhh........eeeeeeeeee....eeeeeeeeee......eeeee........eeeeeeee.........eeeeee........eeeee........eeeeeeee.....eeeeeeeeee......eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------H-----------------------------------------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------------------------------------R-----RN--------------------------------------------------------------------------------------------------------W---------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------V---------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSGLUTAMINASES ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1-----------------------------------------------------------Exon 1.4a  PDB: A:64-145 (gaps) UniProt: 64-145                                   ---------------------------------------Exon 1.6  PDB: A:185-227 UniProt: 185-227  Exon 1.7b  PDB: A:228-287 UniProt: 228-287                  -------------------------------------------------------------------------------Exon 1.10  PDB: A:367-448 UniProt: 367-448                                        ------------------------------------------------------------------------------------------Exon 1.12b  PDB: A:539-592 UniProt: 539-592           Exon 1.13b  PDB: A:593-638 UniProt: 593-638   -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.3b  PDB: A:4-64 UniProt: 4-64                         --------------------------------------------------------------------------------Exon 1.5b  PDB: A:145-184               ------------------------------------------------------------------------------------------------------Exon 1.8  PDB: A:287-332 UniProt: 287-332     -------------------------------------------------------------------------------------------------------------------Exon 1.11a  PDB: A:448-539 UniProt: 448-539                                                 --------------------------------------------------------------------------------------------------Exon 1.14a  PDB: A:638-687 UniProt: 638-687       - Transcript 1 (2)
           Transcript 1 (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:332-367            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 3ly6 A   4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAV--GDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPAL 688
                                    13        23        33        43        53        63        73        83  |     93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683     
                                                                                                          83 86

Chain B from PDB  Type:PROTEIN  Length:683
 aligned with TGM2_HUMAN | P21980 from UniProtKB/Swiss-Prot  Length:687

    Alignment length:685
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     687 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683   | 
           TGM2_HUMAN     4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA-   -
               SCOP domains d3ly6b1 B:4-145 Transglutaminase N-terminal domain                                                                                            d3ly6b2 B:146-468 Transglutaminase catalytic domain                                                                                                                                                                                                                                                                                d3ly6b3 B:469-585 Transglutaminase, two C-terminal domains                                                           d3ly6b4 B:586-688 Transglutaminase, two C-terminal domains                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhh.........eeee...eeeeeee.............eeeee...........eeeee.....--...eeee......eeeeeee.......eeeeeeee........eeeeeeeeee.............hhhhhhhhhh..eeeeeee....eeeeeee......hhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh.........eee..........hhhhh.hhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhh..eeeeeeeee........eeeeee..............eeeeeeeeeee..........eeeeeeeeeee....eeeeeeeehhhhhhh......hhhhhhhhhhheeeeeee.....eee.........eeeeee......eee.hhhh.....hhhhhhhhhhh.............eeeeee..........eeeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeehhhhh........eeeeeeeeee....eeeeeeeeee......eeeee........eeeeeeee.........eeeeee........eeeee........eeeeeeee.....eeeeeeeeee......eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------H-----------------------------------------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------------------------------------R-----RN--------------------------------------------------------------------------------------------------------W---------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------V---------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSGLUTAMINASES ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1-----------------------------------------------------------Exon 1.4a  PDB: B:64-145 (gaps) UniProt: 64-145                                   ---------------------------------------Exon 1.6  PDB: B:185-227 UniProt: 185-227  Exon 1.7b  PDB: B:228-287 UniProt: 228-287                  -------------------------------------------------------------------------------Exon 1.10  PDB: B:367-448 UniProt: 367-448                                        ------------------------------------------------------------------------------------------Exon 1.12b  PDB: B:539-592 UniProt: 539-592           Exon 1.13b  PDB: B:593-638 UniProt: 593-638   -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.3b  PDB: B:4-64 UniProt: 4-64                         --------------------------------------------------------------------------------Exon 1.5b  PDB: B:145-184               ------------------------------------------------------------------------------------------------------Exon 1.8  PDB: B:287-332 UniProt: 287-332     -------------------------------------------------------------------------------------------------------------------Exon 1.11a  PDB: B:448-539 UniProt: 448-539                                                 --------------------------------------------------------------------------------------------------Exon 1.14a  PDB: B:638-687 UniProt: 638-687       - Transcript 1 (2)
           Transcript 1 (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: B:332-367            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 3ly6 B   4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAV--GDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPAL 688
                                    13        23        33        43        53        63        73        83  |     93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683     
                                                                                                          83 86

Chain C from PDB  Type:PROTEIN  Length:683
 aligned with TGM2_HUMAN | P21980 from UniProtKB/Swiss-Prot  Length:687

    Alignment length:685
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     687 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683   | 
           TGM2_HUMAN     4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA-   -
               SCOP domains d3ly6c1 C:4-145 Transglutaminase N-terminal domain                                                                                            d3ly6c2 C:146-468 Transglutaminase catalytic domain                                                                                                                                                                                                                                                                                d3ly6c3 C:469-585 Transglutaminase, two C-terminal domains                                                           d3ly6c4 C:586-688 Transglutaminase, two C-terminal domains                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Transglut_N-3ly6C10 C:5-124                                                                                             -----------------------------------------------------------------------------------------------------------------------------------Transglut_core-3ly6C07 C:256-359                                                                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C01 C:587-686                                                                       -- Pfam domains (1)
           Pfam domains (2) -Transglut_N-3ly6C11 C:5-124                                                                                             -----------------------------------------------------------------------------------------------------------------------------------Transglut_core-3ly6C08 C:256-359                                                                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C02 C:587-686                                                                       -- Pfam domains (2)
           Pfam domains (3) -Transglut_N-3ly6C12 C:5-124                                                                                             -----------------------------------------------------------------------------------------------------------------------------------Transglut_core-3ly6C09 C:256-359                                                                        -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C03 C:587-686                                                                       -- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C04 C:587-686                                                                       -- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C05 C:587-686                                                                       -- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Transglut_C-3ly6C06 C:587-686                                                                       -- Pfam domains (6)
         Sec.struct. author ...........hhhhhhh.........eeee...eeeeeee.............eeeee...........eeeee.....--...eeee......eeeeeee.......eeeeeeee........eeeeeeeeee.............hhhhhhhhhh..eeeeeee....eeeeeee......hhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.......eee..........hhhhh.hhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhh..eeeeeeeee........eeeeee..............eeeeeeeeeee..........eeeeeeeeeee....eeeeeeeehhhhhhh......hhhhhhhhhhheeeeeee.....eee.........eeeeee......eee.hhhh.....hhhhhhhhhhh.............eeeeee..........eeeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeehhhhh........eeeeeeeeee....eeeeeeeeee......eeeee........eeeeeeee.........eeeeee........eeeee........eeeeeeee.....eeeeeeeeee......eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------H-----------------------------------------------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------------------------------------R-----RN--------------------------------------------------------------------------------------------------------W---------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------V---------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSGLUTAMINASES ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1-----------------------------------------------------------Exon 1.4a  PDB: C:64-145 (gaps) UniProt: 64-145                                   ---------------------------------------Exon 1.6  PDB: C:185-227 UniProt: 185-227  Exon 1.7b  PDB: C:228-287 UniProt: 228-287                  -------------------------------------------------------------------------------Exon 1.10  PDB: C:367-448 UniProt: 367-448                                        ------------------------------------------------------------------------------------------Exon 1.12b  PDB: C:539-592 UniProt: 539-592           Exon 1.13b  PDB: C:593-638 UniProt: 593-638   -------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.3b  PDB: C:4-64 UniProt: 4-64                         --------------------------------------------------------------------------------Exon 1.5b  PDB: C:145-184               ------------------------------------------------------------------------------------------------------Exon 1.8  PDB: C:287-332 UniProt: 287-332     -------------------------------------------------------------------------------------------------------------------Exon 1.11a  PDB: C:448-539 UniProt: 448-539                                                 --------------------------------------------------------------------------------------------------Exon 1.14a  PDB: C:638-687 UniProt: 638-687       - Transcript 1 (2)
           Transcript 1 (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: C:332-367            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 3ly6 C   4 ELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAV--GDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPAL 688
                                    13        23        33        43        53        63        73        83  |     93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683     
                                                                                                          83 86

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3LY6)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: E-set (290)

Family: Transglut_C (8)

Homo sapiens (Human) (8)

1a	Transglut_C-3ly6C01	C:587-686
1b	Transglut_C-3ly6C02	C:587-686
1c	Transglut_C-3ly6C03	C:587-686
1d	Transglut_C-3ly6C04	C:587-686
1e	Transglut_C-3ly6C05	C:587-686
1f	Transglut_C-3ly6C06	C:587-686

Clan: Peptidase_CA (169)

Family: Transglut_core (7)

Homo sapiens (Human) (7)

2a	Transglut_core-3ly6C07	C:256-359
2b	Transglut_core-3ly6C08	C:256-359
2c	Transglut_core-3ly6C09	C:256-359

Clan: no clan defined [family: Transglut_N] (7)

Family: Transglut_N (7)

Homo sapiens (Human) (7)

3a	Transglut_N-3ly6C10	C:5-124
3b	Transglut_N-3ly6C11	C:5-124
3c	Transglut_N-3ly6C12	C:5-124

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (TGM2_HUMAN | P21980)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003810	protein-glutamine gamma-glutamyltransferase activity	Catalysis of the reaction: protein glutamine + alkylamine = protein N5-alkylglutamine + NH3. This reaction is the formation of the N6-(L-isoglutamyl)-L-lysine isopeptide, resulting in cross-linking polypeptide chains; the gamma-carboxamide groups of peptidyl-glutamine residues act as acyl donors, and the 6-amino-groups of peptidyl-lysine residues act as acceptors, to give intra- and intermolecular N6-(5-glutamyl)lysine cross-links.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0043277	apoptotic cell clearance	The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte.
	GO:0060445	branching involved in salivary gland morphogenesis	The process in which the branching structure of the salivary gland is generated and organized.
	GO:0032471	negative regulation of endoplasmic reticulum calcium ion concentration	Any process that decreases the concentration of calcium ions in the endoplasmic reticulum.
	GO:0018149	peptide cross-linking	The formation of a covalent cross-link between or within protein chains.
	GO:0007200	phospholipase C-activating G-protein coupled receptor signaling pathway	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent increase in the concentration of inositol trisphosphate (IP3) and diacylglycerol (DAG).
	GO:0043065	positive regulation of apoptotic process	Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
	GO:0045785	positive regulation of cell adhesion	Any process that activates or increases the frequency, rate or extent of cell adhesion.
	GO:0051561	positive regulation of mitochondrial calcium ion concentration	Any process that increases the concentration of calcium ions in mitochondria.
	GO:0060662	salivary gland cavitation	The process in which the solid core of salivary epithelium gives rise to the hollow tube of the gland.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0031226	intrinsic component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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	3ly6
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	TGM2_HUMAN \| P21980	:	1fau 1kv3 2q3z 3s3j 3s3p 3s3s 4pyg

(no "Related Entries Specified in the PDB File" available for 3LY6)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (3, 3)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 24)

PROSITE Motifs (1, 3)

Exons (13, 39)

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